Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01034 ATGGCTCTGCATAGAATTCCTCACACCATTCTAATGGAGATCCTCCTAAAGCTTGACCTTCAAACCCTTTGCTCCGTCGCATGCGTCAGCAAAAGCCTACATGACGCCGTCGTTGACGCCATTTCTCTCCCCTCCGCTCTCCATCTTCCTATCAATTTTCAATTGCAGGATTTCTCTCCGGATTTTCAAACTCTGAAAATCGGCATCCTTGGTCGGTGCCGAGGCATGAGTAGCCTGACTGTTAATTGTCTTCGTCTTCATGATTCTTCTCTCGTGGATTTTTTTGGCCCTCATTTACTCGAGCTGAACTTGTTCTGCTGCTCTTTACTCTCTTATCAATTCCTTGCTGTCACAGGCAAACTTTGTCCCAATTTGAGGGTGCTTGTGCTTGAATTGGTAGCTCAAGATTCTCCTGAGGTATTCAATACAAACTTGGCTGAAATGCTTACAAGATGCTTGTTCTTAGATTCGATATCCCTGAAGATTCGAGGAGCGGGAGATGCTGAGGCTAATTACTTTAGGGGCATTGAAGCATTTCTTCCCAAAACCATGAAGTCACTGAAGTTGAAGCCACTGCTACATCAAGAAGGAATTTGCATCATAAACAAACTAAGAGATTCTGGGAACTCCTTAATCACCACTTATTCCGGAAATTTTGAATCTCCTAAGTTATCTTCAGGGTTAATGTTGCAGTGCTTGTCACTAGCCTTGGATGTTATTTCTAATGAGTTAATTATAACCGTTGCTGAATCTCTTCCTTTTTTGGTAGAGCTTCACTTGGAAGACACGCCGAACCAAGAACAATTGGTGCACCATGACTTGACCAATAGAGGACTTCAGTCATTGAGCACATGTCATAAGCTGATATCACTTTCTCTTATTCGTGGTAGGCATAATCACCAGCTCTCTTTCAAAAAGCTGAATGATATGGGCATGTTTCTCTTGTCGGAGGGTTGCAGAGCTCTTGAGTCAGTGAGATTCTGTGGATTCTCTAAAGTCAGTGATGCTGGATTTGCATCGATCTTTCACTCATGCAATAGGCTGAAGAAATTCGAGATTCGTAATTCAACACATTTCTCAGACCTTGCACTTGAAGGTTTCCATGCCATTGGATGCTCCATAACAGAGTTGAGATTATTATCATGCAACCTTATAACTTGTGAATCTGTGAAGCAGTTGGCGTACTCTACAAGCTTGGAAGTTCTTGATCTACGTGGCTGCAAGAGCATATCAGATTCTTGCATTGATTCCATTTCCACTTTGTGCAATTTATCATCCCTGAATCTAACATCAACTGATATAACTGACAATGGTTTATCTGTTCTTGGTCAGGGGAGTCTACCCATCGTACGATTATCCCTTCGAAGTTGTAAGAGAGTAACCGAAGAAGGAATTTATCGATTGTTTTATGGTGGCGGGACAATAAGCAAGACGTTATCTGCCTTGGATCTTGGACACATTTCAGGAATAACTGATCGAGCAATCCAAATAACTGCTTCAGCTGGTGTCAGGATTACTGAGTTATGCATCAGATCATGCGTCCATGTGACTGATTCTTCAGTGGAAGCTTTGGGGATGAAGAAAAAACTCCAAGGTGAAGGTAAGTTACTTCGTAGGCTTGATCTTTTTAATTGCATTGGTTTATCAATTGGCGCATGGAGATCATTTAGGGGACCTCAGTTTGGTGGGTTACAATGGCTAGGAATAGGCAATACTCGTTTGTGTAGCAATGGAAATGTTGATATGGTCGAGTTATGTTTAAAACGACCTTGGTTGACTTTGTGTTTGGAAGGTTGTGAAGTTGGATGTCATGATGGATGGCAATTCCATAGATCATAG 1839 41.98 MALHRIPHTILMEILLKLDLQTLCSVACVSKSLHDAVVDAISLPSALHLPINFQLQDFSPDFQTLKIGILGRCRGMSSLTVNCLRLHDSSLVDFFGPHLLELNLFCCSLLSYQFLAVTGKLCPNLRVLVLELVAQDSPEVFNTNLAEMLTRCLFLDSISLKIRGAGDAEANYFRGIEAFLPKTMKSLKLKPLLHQEGICIINKLRDSGNSLITTYSGNFESPKLSSGLMLQCLSLALDVISNELIITVAESLPFLVELHLEDTPNQEQLVHHDLTNRGLQSLSTCHKLISLSLIRGRHNHQLSFKKLNDMGMFLLSEGCRALESVRFCGFSKVSDAGFASIFHSCNRLKKFEIRNSTHFSDLALEGFHAIGCSITELRLLSCNLITCESVKQLAYSTSLEVLDLRGCKSISDSCIDSISTLCNLSSLNLTSTDITDNGLSVLGQGSLPIVRLSLRSCKRVTEEGIYRLFYGGGTISKTLSALDLGHISGITDRAIQITASAGVRITELCIRSCVHVTDSSVEALGMKKKLQGEGKLLRRLDLFNCIGLSIGAWRSFRGPQFGGLQWLGIGNTRLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS* 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9698476 9701064 + CsaV3_7G021230.1 Csa07g01034 536597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01034 612 PANTHER UNCHARACTERIZED 6 574 - -
Csa07g01034 612 SUPERFAMILY RNI-like 273 588 - -
Csa07g01034 612 Gene3D Ribonuclease Inhibitor 474 552 IPR032675 -
Csa07g01034 612 Pfam Leucine Rich repeat 396 413 IPR001611 GO:0005515
Csa07g01034 612 Pfam Leucine Rich repeat 421 442 IPR001611 GO:0005515
Csa07g01034 612 ProSiteProfiles F-box domain profile. 1 47 IPR001810 GO:0005515
Csa07g01034 612 SUPERFAMILY F-box domain 5 39 IPR036047 GO:0005515
Csa07g01034 612 SMART LRR_CC_2 446 471 IPR006553 -
Csa07g01034 612 SMART LRR_CC_2 397 421 IPR006553 -
Csa07g01034 612 SMART LRR_CC_2 319 344 IPR006553 -
Csa07g01034 612 SMART LRR_CC_2 502 527 IPR006553 -
Csa07g01034 612 SMART LRR_CC_2 476 501 IPR006553 -
Csa07g01034 612 SMART LRR_CC_2 345 370 IPR006553 -
Csa07g01034 612 SMART LRR_CC_2 422 445 IPR006553 -
Csa07g01034 612 SMART LRR_CC_2 371 396 IPR006553 -
Csa07g01034 612 Pfam F-box domain 4 37 IPR001810 GO:0005515
Csa07g01034 612 Gene3D Ribonuclease Inhibitor 50 464 IPR032675 -
Csa07g01034 612 SUPERFAMILY RNI-like 66 293 - -
Csa07g01034 612 PANTHER RNI-LIKE SUPERFAMILY PROTEIN-RELATED 6 574 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01034 - - - csv:101218770 1194.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00133 Csa-Chr7:1184221 Csa07g01034 Csa-Chr7:9698476 1.04E-71 dispersed
Csa07g01034 Csa-Chr7:9698476 Csa02g00194 Csa-Chr2:1333842 3.42E-14 dispersed
Csa07g01034 Csa-Chr7:9698476 Csa02g02388 Csa-Chr2:21173388 1.45E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g797 . . . . . . . . . . . Cma09g01048 . Car09g00956 Sed01g2636 Cpe06g00856 . Bhi09g01852 Tan01g3265 Cmetu01g2709 . . Mch11g1340 . . . . . . . . . . . . Lsi02g01779 Csa07g01034 . . . . . . . . . . . . Cmo09g01054 . . . . . . . . . . . . . Cla09g02121 Cam09g2208 Cec09g2281 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013838 0 2 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01034 Csa_Chr07 FPKM 1.117479 1.756312 0.961038 1.413296 4.350183 3.079976 3.802739 1.131289 1.87648 1.399991