Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01043 ATGTTAGGCTTTGAAGGTCCTGGAACTAGTGATGAAATTAGAGAGAGCTTTGAAAATTCTGAAGATGAGAGACGGCTGTCCAAAATTGGGAACCTCAAGAAAAAGGCAATAAATGCTTCCAATAAATTTACTCACTCTCTTAAGAAGAGAGGAAAGAGGAAAATTGACTACAGGATTCCTTCAGTACCCATAGAGGATGTACGAGATGCAAAAGAGGAGAGTGCTGTCCATGAATTGCGTCAAAAACTTCTTGAGAGGAATTTATTACCTGTTAGGCTTGATGATTATCATACTTTACTGAGATTTTTGAAAGCTAGAGAGTTTAACATGGAAAAGACAATCCGGATGTGGGAAGAAATGCTTAATTGGAGAAAGGAATATGGAGCTGATACTATTCTAGAGGATTTCGAATTTGAAGAGCTTGAAGAGGTGTTGCAGTATTATCCTCAGGGATATCATGGAGTTGATAAAGAAGGCAGACCAGTTTACATAGAGAGACTAGGAAAAGCCCATCCAAGTAGGCTCATGCATATCACCACGATAGATAGATACTTGAAGTACCATGTGCAAGAATTTGAAAGGGCACTACATGAAAAATTCCCTGCTTGTACAATTGCGTCTAAGAGAAGAATCTGTTCAACGACAACAATATTAGATGTGCAGGGCTTGGGCATGAAAAATTTCTCCCGCACTTCTGCAAATCTCTTAGCTGCCATGACAAAGATAGACAGTTCTTACTATCCTGAGACATTACATAGAATGTATATCGTCAATGCTGGGTCTGGTTTTAAGAAGATGCTCTGGCCAGCTGCTCAGAAATTTCTTGATGTGAAGACTGTTTCCAAGATTCAGGTTCTTGAATCCAAGTCAATTGGAAAGCTACTTGAAGTGATTGATTCAGATCAGTTGCCAGATTTCTTAGGTGGCTCATGTACATGTAGTGGCGTTGAGGGAGGATGCCTTCGATCTAATAAAGGTCCTTGGAACGATCTTGATATTATGAAGGTTGTGCATAATGCAGGAGCCACCTTTGTAAGGCAAGGCCCAAAAGTGGGCAAGAATGAAGCAAAATGTGACTCCCGTGTTCAAATGCCTTCAATGAAGGGAAGAAATAGTGATACATCATTAGCGGATTCAGGATCAGATCTTGATGACCCGTATTCCCCACTGGGGCGTGCTGGCTCTTTGGTTACTTGTTTGGCTCCCGTTCACGAAGAGCATAGGACAGCAGATCCAAATGCTTACTACAGTTGTGATGATTTCCTACCGGCTAGTTCAGTAGCTGACAGTGCCGAAGGCATTGGAGGTTCTCAGGGTCCATCTCTTGAAATAATGGAGAATGGAAATTTCTTGAACAACGAATCATCGAACACAGAAGATGTCATAGAAAATGAGCATGAAATTCTGAAACAAAAACTTGAGAAAAGAAACGTTCAGTCTATGGGGAGAGTTCTTATATCATTCTGGGTTAAATTGGTAGCAGTTGTTCGTAGTTTACAGTTTCAGTTTTGGAAAAGACAGAACAACATATATCCTTCTAACACAGTACACATTACAAATAACAATGCTGCTGCAATTCAAGTGGTAAACGAAGAAGATTTCGTCGGTCCATGTTTACAGCGTCTTGAAAGGCTAGAAAAAATCTTCGTAGAACTGAGCAACAAGCCTGCTAAAATTCCTTTAGAAAAAGAGCATTTACTTACTGAATCTTTGGACAGAATCAAGTCAGTTGAATTTGACCTGGAGAAAACGAAAAGAGCACTCCACGCTACTGTCTTAAAGCAACTTGAGGCTGGCGAGCTGCTAGAAAAATTACGAGACTCCCAATGTCAACAGAGAAGATTTTTGTGTTAG 1854 40.35 MLGFEGPGTSDEIRESFENSEDERRLSKIGNLKKKAINASNKFTHSLKKRGKRKIDYRIPSVPIEDVRDAKEESAVHELRQKLLERNLLPVRLDDYHTLLRFLKAREFNMEKTIRMWEEMLNWRKEYGADTILEDFEFEELEEVLQYYPQGYHGVDKEGRPVYIERLGKAHPSRLMHITTIDRYLKYHVQEFERALHEKFPACTIASKRRICSTTTILDVQGLGMKNFSRTSANLLAAMTKIDSSYYPETLHRMYIVNAGSGFKKMLWPAAQKFLDVKTVSKIQVLESKSIGKLLEVIDSDQLPDFLGGSCTCSGVEGGCLRSNKGPWNDLDIMKVVHNAGATFVRQGPKVGKNEAKCDSRVQMPSMKGRNSDTSLADSGSDLDDPYSPLGRAGSLVTCLAPVHEEHRTADPNAYYSCDDFLPASSVADSAEGIGGSQGPSLEIMENGNFLNNESSNTEDVIENEHEILKQKLEKRNVQSMGRVLISFWVKLVAVVRSLQFQFWKRQNNIYPSNTVHITNNNAAAIQVVNEEDFVGPCLQRLERLEKIFVELSNKPAKIPLEKEHLLTESLDRIKSVEFDLEKTKRALHATVLKQLEAGELLEKLRDSQCQQRRFLC* 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9815773 9822552 - CsaV3_7G021320.1 Csa07g01043 536606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01043 617 MobiDBLite consensus disorder prediction 1 25 - -
Csa07g01043 617 SUPERFAMILY CRAL/TRIO N-terminal domain 69 136 IPR036273 -
Csa07g01043 617 MobiDBLite consensus disorder prediction 429 450 - -
Csa07g01043 617 MobiDBLite consensus disorder prediction 365 381 - -
Csa07g01043 617 SMART sec14_4 140 312 IPR001251 -
Csa07g01043 617 CDD SEC14 144 309 IPR001251 -
Csa07g01043 617 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 14 608 - -
Csa07g01043 617 MobiDBLite consensus disorder prediction 11 25 - -
Csa07g01043 617 Pfam CRAL/TRIO domain 146 309 IPR001251 -
Csa07g01043 617 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 140 315 IPR001251 -
Csa07g01043 617 Pfam CRAL/TRIO, N-terminal domain 95 119 IPR011074 -
Csa07g01043 617 Gene3D - 62 127 - -
Csa07g01043 617 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH13 14 608 - -
Csa07g01043 617 SUPERFAMILY CRAL/TRIO domain 139 337 IPR036865 -
Csa07g01043 617 MobiDBLite consensus disorder prediction 364 385 - -
Csa07g01043 617 SMART CRAL_TRIO_N_2 95 120 IPR011074 -
Csa07g01043 617 Gene3D - 128 349 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01043 - - - csv:101217583 1219.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g01043 Csa-Chr7:9815773 Csa07g01507 Csa-Chr7:15448673 9.56E-161 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g728 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1268 Cone15ag1294 . Csa07g01043 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01034 Cme01g01117
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003795 2 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 5 1 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01043 Csa_Chr07 FPKM 15.407262 17.447891 15.861438 16.27179 30.078407 24.056631 31.426987 31.774216 30.482639 30.162395