Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01045 ATGACGTCGTCTGCAGCCGGGATGTACATGGCTTTCTCTCCCTCTCCTTCCGCTCCTCACTCTCCACATCTTCCTGGTCTTCGCTCTCCCTCCTCTGCATCTGCTGCTGCTATACTCGAGCAAGAAAAGTATCTCTCTGAGTTATTGGCAGAACGACAGAAGCTTAGTCCGTTTATGCCTGTGCTCCCTAATAGTTATCGCTTGCTGAACCAAGAAATATTGCGTGTAACCACTCTATTGGGGAAGGCATCAGTTTTAGGTCAAAGTGGGCTTGAACATGCCAGCCCCCTGGCTTCTGGAGGAATATTTTCAAATGGAGGTGCTGACATGAGTGCATGGCCATCACGGTTTCAATCAGAAATGTCAGGTTTATTACAAGCATCATCAGCACAAAATTGGCTAACTTCCCAAGGTAGTTCATCAGGTCTTATTGTGAAGAGAACCATCAGAGTAGATGTTCCTGTTGAAACCTTTCCTAATTATAACTTTGTCGGCCGCCTCCTTGGACCCAGGGGAAACTCTCTCAAGCGAGTGGAGGAAGAAATGATGAGAGGAAAACCAGGTTATGAGCATTTGAATGAGCCTCTACACATCCTTGTTGAGGCAGAATTGCCAGTTGAAATTATTGATGCTCGCCTCATGCAAGCCCGTGAGATTCTTGAGGACTTGCTCAAACCAATGGAAGAATCTCATGACTTCTATAAGAAGCAACAGCTACGGGAACTAGCCATGCTTAATGGCACGCTTCGTGAGGAGGGCTCGCCTATGTCCAGTTCCGTGTCTCCCTTCCACAATAGCCTTGGAATGAAGAGAGCCAAAACTAGGGGGTAA 831 47.17 MTSSAAGMYMAFSPSPSAPHSPHLPGLRSPSSASAAAILEQEKYLSELLAERQKLSPFMPVLPNSYRLLNQEILRVTTLLGKASVLGQSGLEHASPLASGGIFSNGGADMSAWPSRFQSEMSGLLQASSAQNWLTSQGSSSGLIVKRTIRVDVPVETFPNYNFVGRLLGPRGNSLKRVEEEMMRGKPGYEHLNEPLHILVEAELPVEIIDARLMQAREILEDLLKPMEESHDFYKKQQLRELAMLNGTLREEGSPMSSSVSPFHNSLGMKRAKTRG* 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9888824 9899014 - CsaV3_7G021340.1 Csa07g01045 536608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01045 276 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 150 250 IPR036612 GO:0003723
Csa07g01045 276 PANTHER RNA-BINDING PROTEIN RELATED 180 276 IPR045071 -
Csa07g01045 276 Gene3D K Homology domain, type 1 181 256 IPR036612 GO:0003723
Csa07g01045 276 Pfam Homodimerisation region of STAR domain protein 42 78 IPR032377 -
Csa07g01045 276 CDD SF1_like-KH 148 250 - -
Csa07g01045 276 MobiDBLite consensus disorder prediction 251 276 - -
Csa07g01045 276 MobiDBLite consensus disorder prediction 251 265 - -
Csa07g01045 276 Gene3D K Homology domain, type 1 37 180 IPR036612 GO:0003723
Csa07g01045 276 PANTHER STAR PROTEIN, HOMODIMERIZATION REGION-RELATED 6 179 - -
Csa07g01045 276 PANTHER STAR PROTEIN, HOMODIMERIZATION REGION-RELATED 180 276 - -
Csa07g01045 276 PANTHER RNA-BINDING PROTEIN RELATED 6 179 IPR045071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01045 K14945 QKI; protein quaking - csv:101217820 520.005
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02992 Csa-Chr3:28509849 Csa07g01045 Csa-Chr7:9888824 2.45E-75 dispersed
Csa07g01045 Csa-Chr7:9888824 Csa04g01712 Csa-Chr4:16516169 6.82E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g734 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa07g01045 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01032 Cme01g01114
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006782 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01045 Csa_Chr07 FPKM 0.450634 0.490877 0.07628 0.0 1.539304 1.371296 1.668564 0.08633 0.0 0.097529