Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01048 ATGAGAATCACTGTGATGACAGCCGACGAACAGATTCTTTCCTTGGATGTTGATCCCAATGAATCTGTTGAGAACGTGAAGGCTCTGCTCGAGGTTGAGACTCAAGTACCGCTTCAGCGGCAGCAGCTTCTGTACAATGGAAAGGAGATGAAAAATTTTGAAAAACTGAGTGGCTTGGGTGTTAAAGACGAAGATTTGATTATGATGGTATCAGCTGGCGCTTCTAGTGCTCCTACCAATAACTTGAGCTTTAATCCAGATGGTTCTGCAGTGAACCCTGAAGCCTTCCAGCAACACATTAGACGTGACTCAAATACAATGGCTCAACTTTTTCAGAGTGACCCTGAATTGGCACAAGCTATTGTTGGAAACGACCTGAATAATCTGCAACAGATTTTAAGAGAACGTCATCGTCAAAGATCTGTATTACAGCGTCAACAAGAAGAGGAGATGGCCCTTCTGTATGCAGATCCTTTTGATGTTGAGGCCCAAAAGAAGATTGAAGCTGCCATTCGCCAGAAAGGAATTGATGAAAATTGGGCTGCAGCTCTTGAACACAATCCCGAAGCTTTTGCAAGGGTGGTCATGTTATACGTTGACATGGAAGTTAATGGTGTCCCATTAAAGGCATTTGTTGATAGCGGAGCTCAATCAACAATTATATCAAAAAGCTGTGCTGAGAAATGTGGATTGTTGAGGCTTCTAGATCAACGCTACAAGGGCATTGCTCGTGGAGTAGGCCAATCAGAGATCTTAGGTCGAATCCATGTAGCTCCAATCAAGATTGGTAGTATATTCTACCCCTGCTCCTTTCTGGTACTGGATTCCCCAAATATGGACTTCCTATTTGGTCTGGATATGCTACGGAAACACCAGTGTATTATTGATTTGAAGGAGAATGTTTTGAGAGTTGGTGGAGGAGAGGTCTTTGTACCATTTTTGCAAGAGAAAGACATTCCCCCTTCTCTTTTTGATGAGGAAAGACTCTCAAAGGAAGCCTCTAGCTCTGGAGCGCCAGTGGCTTCATCCCCAACAGAGAACAGCAGAAATGCAAGAGCTGCCCAAGCTACAGGAAATGTTGGGGGAGCAGCCCAGGGTCCGGAATTCGAAGCCAAAGTAGCAAAGCTCGTTGAATTGGGATTCCAAAGAGAAGCTGTAATACAAGCTCTCAAACTATTTGATGGAAATGAAGAACAGGCAGCTGGGTTTCTTTTTGGATGA 1221 44.06 MRITVMTADEQILSLDVDPNESVENVKALLEVETQVPLQRQQLLYNGKEMKNFEKLSGLGVKDEDLIMMVSAGASSAPTNNLSFNPDGSAVNPEAFQQHIRRDSNTMAQLFQSDPELAQAIVGNDLNNLQQILRERHRQRSVLQRQQEEEMALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAEKCGLLRLLDQRYKGIARGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMDFLFGLDMLRKHQCIIDLKENVLRVGGGEVFVPFLQEKDIPPSLFDEERLSKEASSSGAPVASSPTENSRNARAAQATGNVGGAAQGPEFEAKVAKLVELGFQREAVIQALKLFDGNEEQAAGFLFG* 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9997403 10014716 + CsaV3_7G021370.1 Csa07g01048 536611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01048 406 MobiDBLite consensus disorder prediction 332 362 - -
Csa07g01048 406 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Csa07g01048 406 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Csa07g01048 406 CDD UBA_scDdi1_like 370 405 - -
Csa07g01048 406 Pfam UBA/TS-N domain 370 403 IPR015940 -
Csa07g01048 406 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 405 - -
Csa07g01048 406 SMART ubq_7 1 72 IPR000626 GO:0005515
Csa07g01048 406 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Csa07g01048 406 SUPERFAMILY UBA-like 364 406 IPR009060 GO:0005515
Csa07g01048 406 Gene3D - 1 85 - -
Csa07g01048 406 SUPERFAMILY Acid proteases 182 297 IPR021109 -
Csa07g01048 406 Gene3D Acid Proteases 175 321 IPR021109 -
Csa07g01048 406 SMART uba_6 369 406 IPR015940 -
Csa07g01048 406 CDD RP_DDI 181 304 IPR019103 GO:0004190|GO:0006508
Csa07g01048 406 Pfam Aspartyl protease 174 296 IPR019103 GO:0004190|GO:0006508
Csa07g01048 406 PANTHER AT13091P 1 405 - -
Csa07g01048 406 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Csa07g01048 406 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 367 406 IPR015940 -
Csa07g01048 406 MobiDBLite consensus disorder prediction 335 355 - -
Csa07g01048 406 Gene3D - 335 406 - -
Csa07g01048 406 Coils Coil 129 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01048 K11885 DDI1; DNA damage-inducible protein 1 - csv:101218534 786.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g01048 Csa-Chr7:9997403 Csa03g00538 Csa-Chr3:4495475 1.04E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g751 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1285 . Csa07g01048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01025 Cme01g01107
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005655 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01048 Csa_Chr07 FPKM 28.206896 29.182615 12.858303 13.969966 2.813356 1.840023 1.493036 32.652931 34.132172 33.670135