Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01050 ATGAGTGAATCAGCTTATAGGGTAGAAACTACATCCCGCCTTGCCCAATGGAGGATCGAAAATCTTGCTTCCTGTACCTACCGCAAATCCGATCCTTTCAAAATCGGCAAGTGGAAATGGCATTTATCGGTGGAAAAAAACAAACTTTTATACGTTAAATTATACCCAGAAATATCGAACATAACAAGGGATAATCCTCCGATTGTATCTTTCATCATCCGAGTGGTCTCCTTTGCAGGGGATCGGAAGGCTTTGACTCATCCAGAAATAATAGACAAACAGCTTAAAAACAATGACTTTATTTGGCAAATTGAAGTTCCATTAACAGGAAAGTTCATCATTGACGTAGAATTCCTTGATTTGAAGATTGCATCATCAGAGGGTGGGGAACCTTCCTCTATCTGGGTGGATGGATTGACACGACAACAGTCAAATTCAAGAGCTCTTATTTCGTTGGGTCGAATGCTGAAGGAAAGCATCCACACCGATATCATAATTAATGCTTCTGATGGAAGTATTCGAGCCCATCGTGCTATCCTTGCTTCACGATCACCTGTTTTCCACAGCATGTTTTCACATGACCTGAAAGAAAAGGAGCTATCGACGTTAAACATCTCTGATATGTCTTTCGAAGCTTGTCAGGCTTTTCTTAATTACATGTATGGTAATATCCAACATGAAGAGTTTCTAGCCCATAGACTGGCACTTCTTCATGCAGCTGAGAAATATGACATAGATGACCTAAAAGAAGCCTGCCACGATAGTCTGCTAGAAGATATTGATGCCAAGAATGTTCTTGAAAGACTCCAGAATGCATCTCTTTATCAATTGCCAAAACTGAAGACCAGCTGCATGCAGTATCTTGTGAAGTTTGGTAAGATACTCGACATCCGAGATGAATTTAATATCTTTCTGCAAAATGCAGATAGGGATCTAATAGCTGAAATCTTCCATGAAATTCTTAATGCTTGGAAAGGTTTCTAA 984 39.74 MSESAYRVETTSRLAQWRIENLASCTYRKSDPFKIGKWKWHLSVEKNKLLYVKLYPEISNITRDNPPIVSFIIRVVSFAGDRKALTHPEIIDKQLKNNDFIWQIEVPLTGKFIIDVEFLDLKIASSEGGEPSSIWVDGLTRQQSNSRALISLGRMLKESIHTDIIINASDGSIRAHRAILASRSPVFHSMFSHDLKEKELSTLNISDMSFEACQAFLNYMYGNIQHEEFLAHRLALLHAAEKYDIDDLKEACHDSLLEDIDAKNVLERLQNASLYQLPKLKTSCMQYLVKFGKILDIRDEFNIFLQNADRDLIAEIFHEILNAWKGF* 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10018906 10021897 - CsaV3_7G021390.1 Csa07g01050 536613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01050 327 PANTHER OS08G0495500 PROTEIN-RELATED 1 327 IPR044714 -
Csa07g01050 327 CDD BTB_POZ_ZBTB_KLHL-like 161 243 - -
Csa07g01050 327 SUPERFAMILY POZ domain 146 258 IPR011333 -
Csa07g01050 327 PANTHER OS08G0495500 PROTEIN 1 327 - -
Csa07g01050 327 SMART BTB_4 162 260 IPR000210 GO:0005515
Csa07g01050 327 ProSiteProfiles BTB domain profile. 162 221 IPR000210 GO:0005515
Csa07g01050 327 Gene3D Potassium Channel Kv1.1; Chain A 139 290 IPR011333 -
Csa07g01050 327 Pfam BTB/POZ domain 155 258 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01050 K10523 SPOP; speckle-type POZ protein - csv:101218769 644.039
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01098 Csa-Chr4:9266886 Csa07g01050 Csa-Chr7:10018906 6.17E-13 dispersed
Csa06g02154 Csa-Chr6:19286609 Csa07g01050 Csa-Chr7:10018906 1.10E-122 dispersed
Csa06g03018 Csa-Chr6:26001732 Csa07g01050 Csa-Chr7:10018906 1.00E-07 dispersed
Csa07g01050 Csa-Chr7:10018906 Csa07g01126 Csa-Chr7:10960356 5.70E-15 dispersed
Csa07g01050 Csa-Chr7:10018906 Csa06g00544 Csa-Chr6:4667607 2.70E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g755 . . Bda07g00429 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa07g01050 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01024 Cme01g01105
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007616 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32302 PF00651 BTB 1.80E-23 CL0033 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01050 Csa_Chr07 FPKM 17.861025 19.161922 16.968416 16.639637 111.009811 97.434158 107.609688 4.329506 4.48311 5.110664