Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01052 ATGGACTGCGAAGTGATGCATGGAGTGAACGTAATGACAATGGACCAACATCCACTTCTTCCTCAAAATTTCTTTGATCGTATTATCTTCAACTTCCCTCATGCTGGTTTCCAATACTCTAAAGAACATGAACCCAACCAAATCAAACTTCACCAGAATTTAGTGAGAAGGTTTATGAGGAATGCAAAGAAACTATTGGCAGAAAATGGGGAAATCCACATAACGCATAAAACATCACATCCTTATAGTGAATGGAAGATTGAGGAAATTGGAGAAGAAGAAGGATTATATCTAAAAGAAGAAGTTGAATTCGACAAATGTGATTATCCAGGTTACGTGAATAAGAAAGGCAGTGGACCAAATAGCAATAAAACTTTTCCTGTGGGTGCTTCCAGCACTTTTAAGTTCGTCAAAACACTCTCCAAAAAGGAGATGAACAGAAGGTTGGCCCTCTCCACATCCTTGGCCTCTGAATTTACTCAACTTCAAGTTTAA 495 38.38 MDCEVMHGVNVMTMDQHPLLPQNFFDRIIFNFPHAGFQYSKEHEPNQIKLHQNLVRRFMRNAKKLLAENGEIHITHKTSHPYSEWKIEEIGEEEGLYLKEEVEFDKCDYPGYVNKKGSGPNSNKTFPVGASSTFKFVKTLSKKEMNRRLALSTSLASEFTQLQV* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10041912 10042500 + CsaV3_7G021410.1 Csa07g01052 536615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01052 164 PANTHER PHENYLALANYL-TRNA SYNTHETASE 1 139 - -
Csa07g01052 164 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 8 95 IPR029063 -
Csa07g01052 164 Gene3D Vaccinia Virus protein VP39 4 100 IPR029063 -
Csa07g01052 164 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 3 115 IPR019446 GO:0070042|GO:0070475
Csa07g01052 164 PANTHER - 1 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01052 - - K19307 csv:101220432 288.115
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g01052 Csa-Chr7:10041912 Csa07g01054 Csa-Chr7:10051800 9.80E-36 dispersed
Csa07g01052 Csa-Chr7:10041912 Csa07g01053 Csa-Chr7:10046823 1.94E-51 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g772 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa07g01052 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g01099
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000968 3 1 1 2 2 2 2 2 2 3 1 2 2 3 3 3 2 3 3 2 3 4 3 5 7 3 4 3 4 0 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01052 Csa_Chr07 FPKM 0.686715 0.815334 3.739944 3.305748 4.088778 4.847838 5.896031 3.401811 3.1544 4.353464