Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01053 ATGGACATTAATAATACAGAGAAGAGCATAATGCATTACAGCAGCTCTCATAATATACTTCTGGTCGGAGAAGGCGATTTCTCCTTCTCCGCTTGCTTGGCCACGGCCTTTGCCTCTGCCTCCAACATTATTGCTACTTCTCTCGACTCTCGAGATGAACTGGTAATGAAATATGCACGTGCGGCCAGAAACGTGAAAATTTTGGAGGAGTTGGGTGGCACAGTGTTGCATGAAGTGGATGCAACAACAATGAGTCAACACCCACTTCTTCACGACATGTTGTTTGATCGTATAGTCTTCAACTTTCCACATGCTGGGTTTGTTTATAAAGAAAGTAATACTGCACAAATAGAACTCCATCGAAATTTAGTGAGGGTTTTTTTGAGGAATGCAAAGAGTATGATAGATGTTGAAGGTGAAATTCACATAACCCACAAGACATCACATCCTTTCAGTAAATGGGGGATTGTGAACTTAGCATGTGATGAAGGACTTTGTTTGAAAGAAAGTGAAATTTTTCATGCATGGCAATATCCAAATTATGAGAATAAGAGAGGGCATGGGCAGAACCCCGATGGAACTTTCCCTGTTGGAGCATGCAGCACCTTTAAATTTTTCATTGACTACTTATTGTAA 636 40.72 MDINNTEKSIMHYSSSHNILLVGEGDFSFSACLATAFASASNIIATSLDSRDELVMKYARAARNVKILEELGGTVLHEVDATTMSQHPLLHDMLFDRIVFNFPHAGFVYKESNTAQIELHRNLVRVFLRNAKSMIDVEGEIHITHKTSHPFSKWGIVNLACDEGLCLKESEIFHAWQYPNYENKRGHGQNPDGTFPVGACSTFKFFIDYLL* 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10046823 10047820 + CsaV3_7G021420.1 Csa07g01053 536616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01053 211 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 177 IPR029063 -
Csa07g01053 211 PANTHER PHENYLALANYL-TRNA SYNTHETASE 1 208 - -
Csa07g01053 211 Coils Coil 51 71 - -
Csa07g01053 211 PANTHER - 1 208 - -
Csa07g01053 211 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 20 185 IPR019446 GO:0070042|GO:0070475
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01053 - - K19307 csv:105436251 434.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03424 Csa-Chr6:28281208 Csa07g01053 Csa-Chr7:10046823 3.52E-66 dispersed
Csa07g01052 Csa-Chr7:10041912 Csa07g01053 Csa-Chr7:10046823 1.94E-51 tandem
Csa07g01053 Csa-Chr7:10046823 Csa07g01054 Csa-Chr7:10051800 9.80E-46 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g769 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa07g01053 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g01101
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000968 3 1 1 2 2 2 2 2 2 3 1 2 2 3 3 3 2 3 3 2 3 4 3 5 7 3 4 3 4 0 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01053 Csa_Chr07 FPKM 2.578266 2.64123 3.721702 4.701377 30.983372 30.049372 31.099983 15.239958 13.618893 14.694829