Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01057 ATGCCTCGCCTATATCCTCCACCACCACCACCACCACCATCACCACCAACTTCCATAGCTCCACCAGCAAGTTCGCCATCCAGTGGTGCTGCTCTACCAACAACCAGACCATCCCCCACCTCAGCAGCAGTTGCTCAAGCATCTACTCCAACTCAGGCTTCATCTTCAAGAGAGGCGGAGTTGGCTTCTTTGGATCAAATAATTGTACAAAATCGAGCTACAAAACCACACACTCCACTGCTAAATACAAATCACACAGATTCAAGTAAGTACAGAAAACCACAATTACTACAGCAAGCTCGGCCACGACAAACAAATCCAATTATATGGTGTTTTGCATTCCTGTGTCTAGCTTTTAGTCTTCTCCTTATCTTCCTTGGAATTGCTACTTTGATCATTTTCCTGGTTATTAGACCAAGAAATCCTTTGTTTGACATACCAAATGCAAGCCTCAGCACAATCTACTTTGATGCACCTGAATATCTAAACGGAGACTTCACCATTCTCGCAAATTTCACCAACCCAAACCACAGAGTCGATGTGAGATATGAGAATGCCGACATAGAGCTCTTTTTTGGGGATAGACTCATAGCAACTCAAGCAATCCAGCCTTTCAGTCAAAGAAAAAATGAAATAAGATTACAACCTGTTCACTTGACATCCAGCCTAGTTTTCTTGCCACAAAATTTTGGGTTGGTACTTCGACGACAGGTACAGAACAACAAAGTTGTCTATAACATCAGAGGAACTTTTAGGGTCAAAGCTTCAGTTGGTATCATTCATTACTCTTTCTGGTTGCACAGCCGATGCCAGTTGGTGATGACTAGTCCACCAACTGGCATTCTAGTTGCCCGGAGTTGCAAAACCAAGAGGTGA 876 43.49 MPRLYPPPPPPPPSPPTSIAPPASSPSSGAALPTTRPSPTSAAVAQASTPTQASSSREAELASLDQIIVQNRATKPHTPLLNTNHTDSSKYRKPQLLQQARPRQTNPIIWCFAFLCLAFSLLLIFLGIATLIIFLVIRPRNPLFDIPNASLSTIYFDAPEYLNGDFTILANFTNPNHRVDVRYENADIELFFGDRLIATQAIQPFSQRKNEIRLQPVHLTSSLVFLPQNFGLVLRRQVQNNKVVYNIRGTFRVKASVGIIHYSFWLHSRCQLVMTSPPTGILVARSCKTKR* 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10067148 10068023 + CsaV3_7G021460.1 Csa07g01057 536620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01057 291 MobiDBLite consensus disorder prediction 23 57 - -
Csa07g01057 291 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 75 291 - -
Csa07g01057 291 MobiDBLite consensus disorder prediction 1 22 - -
Csa07g01057 291 Pfam Late embryogenesis abundant protein 173 259 IPR004864 -
Csa07g01057 291 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 75 291 - -
Csa07g01057 291 MobiDBLite consensus disorder prediction 1 57 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01057 - - - csv:101218998 501.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02275 Csa-Chr5:25339273 Csa07g01057 Csa-Chr7:10067148 8.83E-50 dispersed
Csa07g01057 Csa-Chr7:10067148 Csa04g01185 Csa-Chr4:10298376 4.92E-10 dispersed
Csa07g01057 Csa-Chr7:10067148 Csa06g02718 Csa-Chr6:23791912 3.45E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g777 . . . . . . . . . . . . . . . Cpe06g00844 Cpe02g00842 . . . . . . . . . . . . . . . . . . . Csa07g01057 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01017 Cme01g01095
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011058 1 1 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01057 Csa_Chr07 FPKM 7.745705 9.381122 11.433106 11.922066 8.168199 6.741684 7.617014 30.292139 29.903738 36.502041