Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01059 ATGGGCTCTGCTTCAGTCGTTGATTTAATAGAAGCCTCCTCTGGCGTGCATTTTTCTGGACGTCTTCTGGATAGAAAGCAACAAAATGGACATACAAGGAGCTTGATATCAGAAACTGAAAATTTTAACAAACAACCTTTTGTCATTGGGGTTGCTGGTGGTGCGGCCTCTGGAAAGACAACAGTTTGCGATATGATCATTCATCAACTTCATGACCAGCGAGTTGTTCTTGTTAACCAGGATTCTTTCTATCATAATTTAACTTCCGAGGAACTTATGCAAGTACATGAATACAACTTTGACCATCCCGATGCATTTGACACAGAGGAACTTTTAAGTTCAATGGATAAATTGAGGCATGGGGAGCCTGTAGATATTCCAAAATATGACTTCAAGAGTTATAAAAATAACGTGTTTCCACCAAGAAGGGTAAACCCTTCCGATGTTATCATTTTGGAAGGCATTCTTGTTTTCCATGACCCTCGTGTTCGAGAACTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTTCGTTTGGCAAGAAGGATAAGGCGTGATACTGTGGAGAAGGCTAGAGACATAGCTGCAGTACTCGATCAGTATTCAAAATTTGTGAAGCCTGCTTTTGACGACTTCATACTTCCTACAAAGAAATATGCTGATATCATCATTCCCAGAGGAGGCGATAATCACGTAGCCATTGATTTAATTGTACAACATATTCGCACAAAGCTTGGTCAGCACGATCTTTGTAAAATATACCCTAATTTATATGTTATCCAGTCAACCTTTCAGATACGAGGCATGCATACATTGATACGAGATGCTAAAACTACAAAGCATGATTTTGTGTTCTATGCTGACCGATTGATTCGGCTGGTTGTTGAGCATGGTCTGGGACATTTACCATTCACAGAAAAGCAGGTGACCACTCCAACTGGATCTGTATACAGTGGTGTTGATTTCTGCAAGAGGTTGTGTGGTGTCTCTGTCATCAGGAGTGGCGAGAGTATGGAAAATGCTCTACGGGCATGTTGTAAAGGCATTAAAATTGGAAAGATTCTCATTCATAGGGAAGGTGACAATGGCCAACAGTTAATTTATGAAAAATTACCCTCGGATATCTCCAATAGGCATGTTTTACTATTGGATCCCATTCTAGGAACAGGAAACTCGGCAGTGCAAGCTATTTCTTTGCTCATAAGTAAGGGTGTTCCAGAGCCTAATATTATCTTTCTCAATCTCATATCAGCACCTCAAGGCGTACATGTGGTGTGCAAACGTTTCCCAAGAATAAAGATTGTGACATCTGAAATTGAGATCGGTTTGAATCAAGATTTTCGAGTGGTGCCTGGTATGGGTGAGTTTGGGGACCGGTATTTTGGAACCGACGATGAGGAGCAAATGAGGCCTCTCCACAATAGTTGTTCTTTCAAGTAA 1446 40.66 MGSASVVDLIEASSGVHFSGRLLDRKQQNGHTRSLISETENFNKQPFVIGVAGGAASGKTTVCDMIIHQLHDQRVVLVNQDSFYHNLTSEELMQVHEYNFDHPDAFDTEELLSSMDKLRHGEPVDIPKYDFKSYKNNVFPPRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTVEKARDIAAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAKTTKHDFVFYADRLIRLVVEHGLGHLPFTEKQVTTPTGSVYSGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPSDISNRHVLLLDPILGTGNSAVQAISLLISKGVPEPNIIFLNLISAPQGVHVVCKRFPRIKIVTSEIEIGLNQDFRVVPGMGEFGDRYFGTDDEEQMRPLHNSCSFK* 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10086934 10093432 - CsaV3_7G021480.1 Csa07g01059 536622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01059 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 239 IPR027417 -
Csa07g01059 481 Pfam Uracil phosphoribosyltransferase 264 465 - -
Csa07g01059 481 Gene3D - 42 249 IPR027417 -
Csa07g01059 481 SUPERFAMILY PRTase-like 249 466 IPR029057 -
Csa07g01059 481 PRINTS Uridine kinase signature 46 63 - -
Csa07g01059 481 PRINTS Uridine kinase signature 76 87 - -
Csa07g01059 481 PRINTS Uridine kinase signature 121 136 - -
Csa07g01059 481 PRINTS Uridine kinase signature 178 188 - -
Csa07g01059 481 PRINTS Uridine kinase signature 192 203 - -
Csa07g01059 481 PRINTS Uridine kinase signature 214 227 - -
Csa07g01059 481 Pfam Phosphoribulokinase / Uridine kinase family 48 234 IPR006083 GO:0005524|GO:0016301
Csa07g01059 481 PANTHER URIDINE KINASE 26 467 - -
Csa07g01059 481 Gene3D - 250 465 IPR029057 -
Csa07g01059 481 CDD UMPK 48 246 IPR000764 -
Csa07g01059 481 PANTHER URIDINE KINASE-LIKE PROTEIN 3 26 467 - -
Csa07g01059 481 TIGRFAM udk: uridine kinase 45 246 IPR000764 -
Csa07g01059 481 CDD PRTases_typeI 323 438 IPR000836 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01059 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101219714 960.674
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02052 Csa-Chr3:16653315 Csa07g01059 Csa-Chr7:10086934 0 dispersed
Csa03g02738 Csa-Chr3:26209407 Csa07g01059 Csa-Chr7:10086934 1.90E-13 dispersed
Csa04g01535 Csa-Chr4:14949717 Csa07g01059 Csa-Chr7:10086934 8.81E-16 dispersed
Csa05g02548 Csa-Chr5:26908752 Csa07g01059 Csa-Chr7:10086934 6.04E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g781 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1241 Cone15ag1266 . Csa07g01059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g01088
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02398 . 33 189 PRT Gene Family AT1G80050 78.3 4.0e-66 247.7
Csa03g00299 . 77 227 PRT Gene Family AT1G80050 75.5 9.3e-63 236.5
Csa05g00402 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Csa02g01900 . 107 256 PRT Gene Family AT1G80050 70.7 8.4e-56 213.4
Csa02g02398 . 1 148 PRT Gene Family AT5G11160 79.7 7.4e-63 236.9
Csa05g00402 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Csa02g01900 . 83 222 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Csa03g00299 . 55 192 PRT Gene Family AT5G11160 72.5 1.4e-53 206.1
Csa02g01900 . 78 258 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Csa03g00299 . 51 227 PRT Gene Family AT1G27450 75.1 1.3e-73 272.7
Csa05g00402 . 7 180 PRT Gene Family AT1G27450 73.6 1.6e-71 265.8
Csa02g02398 . 11 183 PRT Gene Family AT1G27450 68.8 3.5e-66 248.1
Csa02g01318 . 74 558 PRT Gene Family AT2G16570 85.0 1.0e-241 832.8
Csa02g01318 . 73 558 PRT Gene Family AT4G34740 85.4 1.6e-242 835.5
Csa02g01318 . 30 531 PRT Gene Family AT4G38880 70.7 3.5e-199 691.4
Csa02g01900 . 78 258 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Csa03g00299 . 51 227 PRT Gene Family AT1G27450 75.1 1.3e-73 272.7
Csa05g00402 . 7 180 PRT Gene Family AT1G27450 73.6 1.6e-71 265.8
Csa02g02398 . 11 183 PRT Gene Family AT1G27450 68.8 3.5e-66 248.1
Csa02g02398 . 33 189 PRT Gene Family AT1G80050 78.3 4.0e-66 247.7
Csa03g00299 . 77 227 PRT Gene Family AT1G80050 75.5 9.3e-63 236.5
Csa05g00402 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Csa02g01900 . 107 256 PRT Gene Family AT1G80050 70.7 8.4e-56 213.4
Csa03g00299 . 51 144 PRT Gene Family AT4G22570 87.2 3.7e-44 174.1
Csa05g00402 . 6 104 PRT Gene Family AT4G22570 80.8 1.4e-43 172.2
Csa02g01900 . 82 174 PRT Gene Family AT4G22570 80.6 1.6e-39 158.7
Csa02g02398 . 11 100 PRT Gene Family AT4G22570 77.8 4.4e-37 150.6
Csa03g00299 . 52 143 PRT Gene Family AT4G12440 87.0 4.6e-41 163.7
Csa05g00402 . 1 96 PRT Gene Family AT4G12440 82.3 2.3e-40 161.4
Csa02g01900 . 78 173 PRT Gene Family AT4G12440 79.2 4.8e-38 153.7
Csa02g02398 . 1 148 PRT Gene Family AT5G11160 79.7 7.4e-63 236.9
Csa05g00402 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Csa02g01900 . 83 222 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Csa03g00299 . 55 192 PRT Gene Family AT5G11160 72.5 1.4e-53 206.1
Csa06g00490 . 1 186 PRT Gene Family AT1G71750 64.5 1.1e-68 256.5
Csa07g01059 . 16 468 PRT Gene Family AT1G55810 85.4 3.1e-225 777.7
Csa03g02052 . 19 482 PRT Gene Family AT1G55810 73.1 4.3e-198 687.6
Csa07g01059 . 65 467 PRT Gene Family AT3G27440 77.2 1.5e-184 642.5
Csa03g02052 . 80 482 PRT Gene Family AT3G27440 75.2 1.2e-178 622.9
Csa03g02052 . 1 483 PRT Gene Family AT3G27190 86.0 7.7e-246 846.3
Csa07g01059 . 3 467 PRT Gene Family AT3G27190 74.2 8.3e-208 719.9
Csa04g01535 . 3 289 PRT Gene Family AT3G53900 66.6 3.0e-107 385.2
Csa07g01059 . 1 468 PRT Gene Family AT4G26510 84.5 3.6e-232 800.8
Csa03g02052 . 11 482 PRT Gene Family AT4G26510 75.4 4.3e-209 724.2
Csa03g02052 . 1 482 PRT Gene Family AT5G40870 85.9 5.0e-245 843.6
Csa07g01059 . 3 470 PRT Gene Family AT5G40870 73.4 2.4e-207 718.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01059 Csa_Chr07 FPKM 18.912176 21.341351 40.286098 37.509968 66.374886 64.753281 67.967201 40.580101 45.938019 49.504967