Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01062 ATGCCGCAGGATCAATTAAGCTTTATGAATTCCAAACTAATATCTCCCAACAAGAATGTGAGAGGATTGAAAGGCCTGTTTTCCATTTGTAATAATGATCAGCCTTCTTCTGAGGAAGTTATTAATGACCACGAATTGGCTCAACGCAAAGCCGAAGAAGCTGCATCAAGGAGAAATCAAGCAGCAGAATGGCTACGCCAAATGGATCATGGAGCATCAGGAGTACTATCGAAGGAGTCCTCCGAAGAAGAATTCTGTCTTGCACTTCGCAATGGCCTTATCCTCTGCAACGTGCTCAACAAAGTCAATCCTGGTGCTGTTCTCAAAGTGGTGGAGAGTCCAGTTGTAACAGTTCAGTCAACAGAAGGAGCTGCACAATCTGCAATACAGTATTTTGAGAACATGAGGAACTTCTTGGAGGCAGTTAAAGACATGAAGCTCTTGACATTTGAAGCTTCTGACTTGGAAAAGGGAGGTACTTCAGGAAAAGTTGTAGAGTGTATTCTCTGCTTGAAAGGATATTACGAGTGGAAGCAGGCTGGTGGGATTGGGGTTTGGAGATATGGAGGAACTGTACGAATCACATCGCTCGCCAGAAGTTCACCATGCATAACTGAAAGTGAGAGTGCAGACGAATCAGTAGACGAATCAGTAGACGAATCAGTAGACGAATCGGATTCATCTCAGTTTGAGCAGCTACTAGACTTCCTCCATCTTTCCAATGAAGTTTCAGTTGAAGAATTCAGAACTTGCAGTGCTCTTGCTTTTCTTTTTGATCGTTTTGGACTTAAACTTCTACAAGCATACCTCCGAAAGAGTGATGGGATTGAAGATTTGCCTTTAAATGCAATGGTAATTGATACATTACTTAACAAGATTGTTAAGGATTTCTCTGCACTGCTTGTGTCCCAAGGAACTCAGCTTGGACTATCTCTGAAGAAAATATTGAAAAGTGATTTGAGGTCACTGTCAAAGTCTGAATTCATTCAAGCAATTTCCCGATACATCAACCAAAGAGCTAATATGGCATCAAGCGACTTCTCCAAGTTCTGTGTTTGTGGAGGAAAAAGTGAGGTTATTCAAAGGGTTCCTGCCGACCATGATGATCAGATTCAGGGGCTAAAGTCAGAATTTGAAGAAACCAAACTTGAAGTTAAAAATATACAATCTCAATGGAATGAAGAAGTCGAAAGGCTACAACATCATCTCAAAGGCCTTGAAATGGCTTCCTCTTCTTACCACAAGGTATTGGAAGAGAATCGTATACTTTACAATCAAGTTCAAGACCTTAAAGGAACAATAAGGGTGTACTGTAGAGTGAGGCCTTTCTTACCGGGACAATCAAATCAGCATTCTACAGTGGACTATATTGGAGAAAATGGGAACATTATGATTGCAAATCCTCTAAAGCAAGGAAAAGAAGCAAGAAGAGTATTTTCCTTCAATAAAGTTTATGGAACTAATGTCACGCAAGAAAAAATATATATAGACACCCAACCATTGATCAGATCTGTTCTTGATGGTTTTAATGTTTGCATCTTCGCATATGGACAAACTGGCTCGGGAAAGACGTATACAATGAGTGGCCCAGATTTGATGACTGAGGACACATGGGGGGTTAATTATCGAGCTCTCAATGACTTATTCCAGATATCAAATGCAAGGTTGGATGTGATGAAGTATGAAGTTGGAGTTCAAATGATTGAAATATACAATGAACAAGTGAGAGATTTGTTGGTCAGTGATGGCTCAAACAGAAGGTTAGATATTAGAAATAACTCCCAACTTAGTGGCCTCAATGTGCCTGATGCAAGTTGGGTTCCTGTGACATGTACTCAAGATGTTCTTAGTTTGATGAGAATTGGTCAGAAGAATCGAGCTATTGGTGCTACAGCTTTAAATGAAAGAAGTAGTCGCTCACACAGTGTTTTAACAATCCATGTCCTTGGAAGAGATTTGGTCTCCGGATCCATCCTTAGGGGATGTCTTCATCTAGTAGATCTGGCTGGGAGTGAAAGAGTGGACAAATCTGAAGCTGTTGGCGACAGACTGAAGGAAGCACAGCATATAAACAAATCCCTTTCTGCACTTGGAGATGTGATTTCTGCCCTTGCACAAAAGAGTGCACATATCCCTTACAGGAATAGCAAACTCACTCAACTCCTACAAGATTCTTTAGGTGGACAAGCTAAGACATTGATGTTTGTACATATAAACCCCGAAGTTGACGCACTTGGAGAGACAATTAGCACGCTTAAGTTTGCAGAGAGAGTTGCCTCTATAGAATTAGGTGCAGCCCGCTGTAATAAAGAAAATGGTCAAATTCGAGAACTTAAAGATGAGATATCAAATCTTAAATCGACATTGGAGAGGAAGGATGCAGAGCTTGAACAACTAAAAAGTGGCAGTGCTCGTGCCTTCGTAGAAATTCAAAAGCCAAGAGCTGCATCTCCCTTACGTGTTTTAAGACATGGTACCAGTGGAGGTGCTAAGCCTGAAAATTGTCAACCGCCTTTGAATGATGCTAAAACTTTTGAGGCTAGAAGCTACTCTTCAGGAAAGCAAAGAAGGCCAAGGTTTCCCTCAACATTCACGGAGAAGGATGCAATAAAAATGCCCCTATTAGCTGAAGAGAGATCAACAACGAGTTCAAGCTCTGGAAACCCAAGGTCACCATCTCCACCAATCAGGAGATCAATATCAACAGATAGGGGTGCCTTTATAAGAAGCAAGGTCAAAACAGAGACGAACGAGAACCAACCAATTGCAAAGCCTTCATTCCCGACAAGAGTGCACGTTAATAAGTCAATGGCCTCAGTCCCAGCAATCGATAATCGAGGAAGAGTAAACATCAGTTGTCAAGAGCATGAAAACTTGTCTGATGCATTGGTTGGTATCCAAAAAGTAATGGCTTCAACAAAGAAGAAACAACTGGTTTGCCAAGAAAATAATGAAGATGAACAACAGGTGAAGCAGTCTTTAAATACAATGCATGGTGGTGCAAGGAGAAGCAGAAATGAAGGCAAAAGCAAAGCAAAGCAACAACAGTTACCTGGTGCAGCAGCTAAGATTAATAACCAGAAGCATCCTGAGAATGTGGTAACAACATTTCTTACTGACATTAATGCGGCTGGAAAAATGGAGGATGCAAGAAAGAGTGACTTCTCCGAAATGGAGAACGAGCATTTTCTTGCGGGATTGCCTCATGATGGTGCTTTAAAGGTTAAAAAAACTCGTCAGAACTTCCCAAGAAACTCTCAGAATCTGGAACCACCACCAAGAATGACAGTTTCGGGCGTTGAAAGCTTGCTCACTACCAGTAAAGTTGAGAATGGGAATCGCAATCAAACTGAAGTTAGCGAGAAATCAATGTCTGAATTTAGAAGAAGTAGATCTACACCTCGCGGGAAATTTTTGGTAATACCATGA 3429 41.18 MPQDQLSFMNSKLISPNKNVRGLKGLFSICNNDQPSSEEVINDHELAQRKAEEAASRRNQAAEWLRQMDHGASGVLSKESSEEEFCLALRNGLILCNVLNKVNPGAVLKVVESPVVTVQSTEGAAQSAIQYFENMRNFLEAVKDMKLLTFEASDLEKGGTSGKVVECILCLKGYYEWKQAGGIGVWRYGGTVRITSLARSSPCITESESADESVDESVDESVDESDSSQFEQLLDFLHLSNEVSVEEFRTCSALAFLFDRFGLKLLQAYLRKSDGIEDLPLNAMVIDTLLNKIVKDFSALLVSQGTQLGLSLKKILKSDLRSLSKSEFIQAISRYINQRANMASSDFSKFCVCGGKSEVIQRVPADHDDQIQGLKSEFEETKLEVKNIQSQWNEEVERLQHHLKGLEMASSSYHKVLEENRILYNQVQDLKGTIRVYCRVRPFLPGQSNQHSTVDYIGENGNIMIANPLKQGKEARRVFSFNKVYGTNVTQEKIYIDTQPLIRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLMTEDTWGVNYRALNDLFQISNARLDVMKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNNSQLSGLNVPDASWVPVTCTQDVLSLMRIGQKNRAIGATALNERSSRSHSVLTIHVLGRDLVSGSILRGCLHLVDLAGSERVDKSEAVGDRLKEAQHINKSLSALGDVISALAQKSAHIPYRNSKLTQLLQDSLGGQAKTLMFVHINPEVDALGETISTLKFAERVASIELGAARCNKENGQIRELKDEISNLKSTLERKDAELEQLKSGSARAFVEIQKPRAASPLRVLRHGTSGGAKPENCQPPLNDAKTFEARSYSSGKQRRPRFPSTFTEKDAIKMPLLAEERSTTSSSSGNPRSPSPPIRRSISTDRGAFIRSKVKTETNENQPIAKPSFPTRVHVNKSMASVPAIDNRGRVNISCQEHENLSDALVGIQKVMASTKKKQLVCQENNEDEQQVKQSLNTMHGGARRSRNEGKSKAKQQQLPGAAAKINNQKHPENVVTTFLTDINAAGKMEDARKSDFSEMENEHFLAGLPHDGALKVKKTRQNFPRNSQNLEPPPRMTVSGVESLLTTSKVENGNRNQTEVSEKSMSEFRRSRSTPRGKFLVIP* 1143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10136430 10148470 + CsaV3_7G021510.1 Csa07g01062 536625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01062 1142 PRINTS Kinesin heavy chain signature 508 529 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa07g01062 1142 PRINTS Kinesin heavy chain signature 631 648 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa07g01062 1142 PRINTS Kinesin heavy chain signature 662 680 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa07g01062 1142 PRINTS Kinesin heavy chain signature 711 732 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa07g01062 1142 PANTHER KINESIN-LIKE PROTEIN KLP-3 28 1136 - -
Csa07g01062 1142 MobiDBLite consensus disorder prediction 845 859 - -
Csa07g01062 1142 ProSiteProfiles Calponin homology (CH) domain profile. 55 176 IPR001715 GO:0005515
Csa07g01062 1142 MobiDBLite consensus disorder prediction 982 1023 - -
Csa07g01062 1142 MobiDBLite consensus disorder prediction 818 904 - -
Csa07g01062 1142 Gene3D Kinesin motor domain 376 763 IPR036961 -
Csa07g01062 1142 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 797 IPR027417 -
Csa07g01062 1142 SUPERFAMILY Calponin-homology domain, CH-domain 51 193 IPR036872 -
Csa07g01062 1142 PANTHER KINESIN-LIKE PROTEIN KIN-14F 28 1136 - -
Csa07g01062 1142 Coils Coil 371 409 - -
Csa07g01062 1142 ProSiteProfiles Kinesin motor domain profile. 433 761 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa07g01062 1142 MobiDBLite consensus disorder prediction 982 1000 - -
Csa07g01062 1142 SMART ch_5 57 174 IPR001715 GO:0005515
Csa07g01062 1142 SMART kinesin_4 431 769 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa07g01062 1142 MobiDBLite consensus disorder prediction 1105 1120 - -
Csa07g01062 1142 Pfam Calponin homology (CH) domain 56 176 IPR001715 GO:0005515
Csa07g01062 1142 Gene3D - 47 176 IPR036872 -
Csa07g01062 1142 MobiDBLite consensus disorder prediction 1105 1142 - -
Csa07g01062 1142 Pfam Kinesin motor domain 439 761 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa07g01062 1142 MobiDBLite consensus disorder prediction 877 898 - -
Csa07g01062 1142 Coils Coil 768 802 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01062 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101221138 2172.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00102 Csa-Chr4:564340 Csa07g01062 Csa-Chr7:10136430 0 dispersed
Csa04g01302 Csa-Chr4:13208371 Csa07g01062 Csa-Chr7:10136430 2.43E-98 dispersed
Csa05g00279 Csa-Chr5:1714005 Csa07g01062 Csa-Chr7:10136430 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g727 Blo03g00494 . . . . . . . . . Cma01g01058 Cma09g01033 Car01g00932 Car09g00939 . Cpe06g00841 Cpe02g00838 Bhi09g01820 . . . . Mch11g1312 . . . . . . . . Cone6ag0001 Cone9ag0003 . . Lsi02g01801 Csa07g01062 . . . . . . Bpe11g00603 . . Bma14g00667 . Cmo01g01099 Cmo09g01035 . . . . . . . . . . . . . Cla09g02100 Cam09g2186 Cec09g2255 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007328 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01062 Csa_Chr07 FPKM 0.0 0.0 0.0 0.0 1.26381 2.262248 1.306749 0.0 0.0 0.0