Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01065 ATGCCTACAATTCTAAGGAATCCCTTTCTTCCTCCCAGTTTCTTCTTCACCATACCCTTTATTTTATGTCTAAATTCCCTTCTCTTTTCTTCTTCTTACTCCATTGATGACCAGGGTAGAGTTCTTCTTGAATGGAAGAATAATCTAACAAGCCCCACAGATGTGTTAGGTTCATGGAATCCGGACGCGGCTACGCCGTGTTCATGGTTTGGAGTCATGTGCAACTCCAATGGACATGTGGTGGAGATAATCCTGACATCACTGGAATTGCTAGGTACATTGCCTACAAATTTTCAAGCTCTCAAGTTCTTGAGCACCCTTGTGATCTCTGACACGAATATTACGGGAAGCATTCCGAAAGAGTTTGGGGATTATTTGGAGTTAAATGTTCTTGATCTAAGCAGAAATTGCCTCGAGGGAATAATCCCAGAAGAGCTTTGCAGGCTGAGCAAGCTACAGGATTTGATTCTTCATAACAATGAGTTTGAAAACATACCTACTACGATTGGAAATCTTACAAGCCTTGTGAATTTCCAAATCACAGACAATAGTATAAATGGGGAGATTCCCAAGAGCATTGGAATGTTGAAGAATCTTATGGTTTTCAAAGCTGGAGGGAATTTATATCTAGAGGGTTTGTTGCCAGATGAGATTGGAAACTGCAGCAGTTTAACAATGTTAGGCTTATCCGACACTGGAATCTACGGTGCTCTTCCTCCAACAATTGGGAATCTGCAAAAGATCCAGACCATACATATGTATAGATCAAAACTTTTTGAATCACTCCCAGAAGAGATTACAAACTGTAGTGAATTACAAACTCTTAGACTGTATCAAAATGGTATTTCTGGGAAAATACCACGAGGAATTGGGAAGATGAAAAAGCTTAGAATCCTTCTTCTATGGTTGAACTTGATGGACGGTGACATTCCAGAAGGAATTGGAAACTGCGATGAACTGGTACTACTTGATTTTTCAGAAAATTCCCTAACAGGACCTATACCTAAAAGTTTAGGACGACTTAAAAACCTTGCAGACATTCAACTAAGTGTTAATCAGCTTACTGGTACAATACCACCTGAAATTTTTAATATCACGACTTTGGTTCATGTGGAAATAGACAACAACAGATTATGGGGGGAGATACCAACTAATGTAGGGAACCTGAAGAACCTTCGTACATTTTTACTATGGGGGAACAACTTAACAGGCACTATTCCCGCCAGTCTCTCAGACTGCTCAAACATCATCTTGCTTGATTTATCTCTCAACCACTTAATAGGACCAATACCGACAGGGATTTTCGCAATGAAAGAACTCTCCAAACTTCTTCTCTTATCAAATAATCTATCAGGGACCATCCCTCCTGAAATTGGAAACTGTACCACATTAACCAGGCTTAGACTGTCTATGAATAAGCTTGGAGGTACTATTCCTTCAGAGATGGGAAATCTCAAGAACTTAGAACATCTTGACTTGGGTGAAAACCTTTTGGTTGGAGGAATTCCCTCGACCTTTTCCACATTGGAAAAGCTTGAGTCTCTTGACCTACGTACAAACAAGCTCACTAGTCTTCCAAATATTCTGCCAAAGAACCTAGTACTTCTTAATGTATCCAACAACATGATTAAAGGTCAGCTCAAACCCAACATTGGAGAATTGTTGGAATTAACTAAACTAGACCTAAAAAACAACCAGTTTTATGGGAAGATCCCTGAAGAAATAACATACTGTGAGAAAATCCAATATTTAGACCTCAGCAGCAATTTCTTCTCTGGGGAAGTCCCTAAGCAATTAGGAACATTTGCTTCACTTGAAATTGCTCTTAATCTAAGTTACAATCAATTCTCAGGTCAAATCCCAAATGAACTCTCTGGTCTCACCAAGCTAAGTGTTCTAGACCTCTCCCACAACAACTTCTCAGGGAAACTTGGCTTTCTATCAGAGCTTGAAAACCTTGTCACTCTAAACATCTCCTATAACCACTTCTCTGGAAAATTGCCCAACACACCCTTCTTTCAAAAACTCCCTGAAAGCTCTGTTTTCGGAAACAAAGACCTCATCATTGTTTCAAATGGAGGACCTAATCTTAAAGACAATGGGAGATTTAGCAGCATAAGCAGAGAAGCAATGCATATAGCCATGCCTATCTTGATCAGTATAAGTGCAGTGTTGTTCTTTTTAGGATTCTACATGCTAATTCGAACACACATGGCCCATTTCATCCTTTTCACAGAAGGCAACAAATGGGAAATAACCCTGTTTCAAAAGCTCGATTTCTCAATCGACCACATCATAAGAAACTTAACCGCATCCAACGTTATCGGCACCGGAAGCTCCGGTGCCGTCTACAAAATCACAACCCCAAATGGGGAAACAATGGCAGTGAAGAAAATGTGGTCCGCTGAAGAAACTGGAGCCTTCAGCACTGAAATCGAAATTTTGGGATCAATTCGACACAAGAACATAATCAGACTACTAGGTTGGGGATCCAACAGGAATTTGAAAATTCTGTTTTATGATTATCTTCCAAATGGAAACTTGGGCTCCCTTATCCATGTCTCTGAAAAAGAAAGAGCAGAATGGGAGGTCAGATACGAAGTCCTTCTAGGAGTGGCTCATGCTCTAGCATATCTTCACCATGATTGTATTCCACCAATCTTACATGGCGATGTTAAAACCATGAATATCCTGCTCGGCCTTGACTTTGAACCATATCTAGCTGACTTTGGGATAGCCGAAATAGTAAGTACAAAAAGTGGCAACGATAGTGCAGAGACGCCATTGACAAGACCTCAACTTGCAGGCTCTTTTGGCTACATGGCCCCTGAAAAAGGGTCGATGATGAGAGTCACAGAGAAGAGCGATGTTTATAGCTTCGGTGTGGTGATAATGGAGGTTCTAACAGGGCGGCATCCACTGGACCCAACTTTACCAGGAGGAGTAAATCTGGTGCAATGGGTTCAAAACCATTTCGCCGCAGACAAAAACAGAGCCGACATTTTCGATTTAAAGCTCAGAGGAAGAACGGATCCGACAATCAACGAAATGATTCAAACCCTAGCCGTGGCATTGGTTTGTGCCAGCGTGAAGGCTGATGATCGACCGTCTATGAAAGATGTCGTGGTGATGCTGGAGGAGATTCGGCATTCGGAATTGGGAAGAGGTGCTACCGAAAGCGATGAGGCTAAGCCGGGAGTAGCGGTTGTGGTTGAAGGATGTTTAAACCCGTAG 3234 41.47 MPTILRNPFLPPSFFFTIPFILCLNSLLFSSSYSIDDQGRVLLEWKNNLTSPTDVLGSWNPDAATPCSWFGVMCNSNGHVVEIILTSLELLGTLPTNFQALKFLSTLVISDTNITGSIPKEFGDYLELNVLDLSRNCLEGIIPEELCRLSKLQDLILHNNEFENIPTTIGNLTSLVNFQITDNSINGEIPKSIGMLKNLMVFKAGGNLYLEGLLPDEIGNCSSLTMLGLSDTGIYGALPPTIGNLQKIQTIHMYRSKLFESLPEEITNCSELQTLRLYQNGISGKIPRGIGKMKKLRILLLWLNLMDGDIPEGIGNCDELVLLDFSENSLTGPIPKSLGRLKNLADIQLSVNQLTGTIPPEIFNITTLVHVEIDNNRLWGEIPTNVGNLKNLRTFLLWGNNLTGTIPASLSDCSNIILLDLSLNHLIGPIPTGIFAMKELSKLLLLSNNLSGTIPPEIGNCTTLTRLRLSMNKLGGTIPSEMGNLKNLEHLDLGENLLVGGIPSTFSTLEKLESLDLRTNKLTSLPNILPKNLVLLNVSNNMIKGQLKPNIGELLELTKLDLKNNQFYGKIPEEITYCEKIQYLDLSSNFFSGEVPKQLGTFASLEIALNLSYNQFSGQIPNELSGLTKLSVLDLSHNNFSGKLGFLSELENLVTLNISYNHFSGKLPNTPFFQKLPESSVFGNKDLIIVSNGGPNLKDNGRFSSISREAMHIAMPILISISAVLFFLGFYMLIRTHMAHFILFTEGNKWEITLFQKLDFSIDHIIRNLTASNVIGTGSSGAVYKITTPNGETMAVKKMWSAEETGAFSTEIEILGSIRHKNIIRLLGWGSNRNLKILFYDYLPNGNLGSLIHVSEKERAEWEVRYEVLLGVAHALAYLHHDCIPPILHGDVKTMNILLGLDFEPYLADFGIAEIVSTKSGNDSAETPLTRPQLAGSFGYMAPEKGSMMRVTEKSDVYSFGVVIMEVLTGRHPLDPTLPGGVNLVQWVQNHFAADKNRADIFDLKLRGRTDPTINEMIQTLAVALVCASVKADDRPSMKDVVVMLEEIRHSELGRGATESDEAKPGVAVVVEGCLNP* 1078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10186707 10190769 - CsaV3_7G021540.1 Csa07g01065 536628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01065 1077 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 14 1058 - -
Csa07g01065 1077 Pfam Protein kinase domain 772 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01065 1077 Gene3D Ribonuclease Inhibitor 184 231 IPR032675 -
Csa07g01065 1077 Gene3D Ribonuclease Inhibitor 335 433 IPR032675 -
Csa07g01065 1077 ProSitePatterns Protein kinases ATP-binding region signature. 775 798 IPR017441 GO:0005524
Csa07g01065 1077 SMART LRR_sd22_2 554 586 - -
Csa07g01065 1077 SMART LRR_sd22_2 509 530 - -
Csa07g01065 1077 SMART LRR_sd22_2 627 655 - -
Csa07g01065 1077 SMART LRR_sd22_2 485 504 - -
Csa07g01065 1077 Gene3D Ribonuclease Inhibitor 34 183 IPR032675 -
Csa07g01065 1077 SMART serkin_6 769 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01065 1077 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Csa07g01065 1077 Pfam Leucine rich repeat 104 161 IPR001611 GO:0005515
Csa07g01065 1077 Pfam Leucine rich repeat 463 522 IPR001611 GO:0005515
Csa07g01065 1077 Gene3D Ribonuclease Inhibitor 434 693 IPR032675 -
Csa07g01065 1077 SUPERFAMILY L domain-like 282 677 - -
Csa07g01065 1077 Pfam Leucine Rich Repeat 652 675 IPR001611 GO:0005515
Csa07g01065 1077 Gene3D Phosphorylase Kinase; domain 1 748 842 - -
Csa07g01065 1077 Gene3D Transferase(Phosphotransferase) domain 1 843 1067 - -
Csa07g01065 1077 ProSiteProfiles Leucine-rich repeat profile. 629 651 IPR001611 GO:0005515
Csa07g01065 1077 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 14 1058 - -
Csa07g01065 1077 ProSitePatterns Serine/Threonine protein kinases active-site signature. 887 899 IPR008271 GO:0004672|GO:0006468
Csa07g01065 1077 Gene3D Ribonuclease Inhibitor 232 334 IPR032675 -
Csa07g01065 1077 ProSiteProfiles Protein kinase domain profile. 769 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01065 1077 SMART LRR_typ_2 627 650 IPR003591 -
Csa07g01065 1077 SMART LRR_typ_2 341 365 IPR003591 -
Csa07g01065 1077 SMART LRR_typ_2 485 508 IPR003591 -
Csa07g01065 1077 SMART LRR_typ_2 554 578 IPR003591 -
Csa07g01065 1077 SMART LRR_typ_2 437 461 IPR003591 -
Csa07g01065 1077 SMART LRR_typ_2 509 532 IPR003591 -
Csa07g01065 1077 SMART LRR_typ_2 389 413 IPR003591 -
Csa07g01065 1077 SMART LRR_typ_2 149 172 IPR003591 -
Csa07g01065 1077 ProSiteProfiles Leucine-rich repeat profile. 511 532 IPR001611 GO:0005515
Csa07g01065 1077 SUPERFAMILY L domain-like 65 380 - -
Csa07g01065 1077 SUPERFAMILY Protein kinase-like (PK-like) 760 1047 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01130 Csa-Chr3:8912410 Csa07g01065 Csa-Chr7:10186707 0 dispersed
Csa07g01065 Csa-Chr7:10186707 Csa07g01394 Csa-Chr7:14158985 0 dispersed
Csa07g01065 Csa-Chr7:10186707 Csa01g00130 Csa-Chr1:766752 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78482 PF00069 Pkinase 2.80E-35 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01065 - - csv:101221377 2124.36