Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01069 ATGCAGAAAATGGCGCAGGGTTGGTTCACGCAGGGAGGTAGTAGTGGCAGTGATAATCAACTCAAAACTTCATCTTCATTGCTCGCCGATTGGAATTCTTACGCAGAATCACAGGCTGCTGATGATAGCACCTTCAATTTGGGAATTGGCTTGGATCTCGAAAGCGCTGTTAGGTCCGCCAATGAAACTGTTTCGGGAACTTTCAGCGTGGTTTCTAAAGGAGTGAGAGAACTTCCTGGAAATTTCCAATCTGCAACTAGCAATGTTCCCTCAGGAAAAGCCCTGATGTATTTTGGTTTGTTTCTAGCAACTGGGGTTTTCTTTATTTTCATTGCGTTTACAATGTTCCTCCCTGTCATGGTTCTGATGCCTCAAAAGTTTGCCATCTGCTTTACCCTTGGATGTTGCTTCATAATTGGATCGTTCTTTGCACTCAAGGGTCCAAAGAATCAGCTTGCACATATGTTCTCAAAAGAGAGACTTCCTTTTACAGTGATCTTTATTGGTAGTATGTTGGGCACCTTATATGTTTCCATGGGCCTCCACAGCTATATCCTTTCAGTTTTCTTCTCTGTATTACAGGTGATCTCAACTCCACTGTGGTGTTCAGTTGGTGTACTGCACATTTCTCTCCTAACTAGAGATCTATGTTAA 654 42.81 MQKMAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSTFNLGIGLDLESAVRSANETVSGTFSVVSKGVRELPGNFQSATSNVPSGKALMYFGLFLATGVFFIFIAFTMFLPVMVLMPQKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSMGLHSYILSVFFSVLQVISTPLWCSVGVLHISLLTRDLC* 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10249886 10262402 - CsaV3_7G021580.1 Csa07g01069 536632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01069 217 PANTHER UNCHARACTERIZED 6 197 IPR011691 GO:0016021|GO:0016192
Csa07g01069 217 Pfam Got1/Sft2-like family 95 198 IPR007305 GO:0016192
Csa07g01069 217 PANTHER VESICLE TRANSPORT PROTEIN 6 197 - -
Csa07g01069 217 MobiDBLite consensus disorder prediction 1 21 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01069 - - - csv:101220668 388.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02582 Csa-Chr3:24362371 Csa07g01069 Csa-Chr7:10249886 2.79E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g636 . . Bda07g00398 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0019 Cone9ag0018 . . . Csa07g01069 . . . . . . Bpe11g00577 . . Bma14g00695 . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01084 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001905 3 2 2 2 3 0 3 2 2 2 1 2 2 4 2 2 1 3 3 2 2 2 1 2 2 2 2 3 2 3 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01069 Csa_Chr07 FPKM 1.214404 0.985185 20.274376 21.291933 16.912287 13.412362 17.279041 8.569288 8.76862 9.145773