Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01078 ATGGATGATCTCGAAACTCGAAGAATTAGAAACATATGTATATTAGCTCACGTCGACCATGGCAAGACGACACTTGCCGACCATCTTATAGCCGCCTCGGGGGGCGGTTTGATCCACCCAAAGATGGCGGGTCGCCTCCGTTTCATGGATTATCTTGATGAGGAACAAAGGCGGGCGATTACCATGAAGAGCTCTTCGATTGGTTTACGGTACAAGGAATACTCTATTAACCTCATTGATTCGCCCGGCCATATGGATTTTTGTAGTGAAGTGTCCACTGCTGCTAGATTGAGTGATGGGGCATTGGTTTTAGTTGATGCTGTGGAGGGTGTGCACATTCAAACTCATGCTGTTTTGCGACAGGCTTGGATTGAGAAGCTTGCGCCGTGTTTGGTTCTTAATAAGATTGATAGGTTGATATGTGAGTTGAAGTTGAGTCCTATGGAAGCGTATACTCGTTTGTTGAGGATTGTTCATGAAGTTAATGGGATAATGAGTGGATATAAGTCCGAGAAGTATTTGTCCGATGTGGATTCAATACTTGCAGGTTCTTCAGGTGAGGTAAATGATGAGAATCTCGAGTTTATTGAGGACGATGAGGAAGATACATTTCAACCACAGAAAGGGAATGTGGTTTTTGTATGTGCTTTAGATGGGTGGGGTTTTGGCATTAATGAGTTTGCTGAGTTTTATGCTTCAAAGCTTGGGGCCAATGTATCTGCATTGAAGAAGGCCTTGTGGGGTCCACGGTATTTTAATCCGAAAACCAAGATGATCGTTGGAAAGAAGGCCATGGCTGGAGGAAGTAAAGCTCGGCCTATGTTTGTTCAATTTGTGCTTGAGAGACTTTGGGAAGTTTATGGGGCTGCTCTAGAAACTGATGGGAATAAGGAGGTACTTCAGAAGGTTAACAGTACATTTAATTTGACTATACCAGCTCGAGAACTTTCTAACAAGGATCCAAAGGTGGTTCTTCAAGCTATTATGAGTCGTTGGCTTCCTCTTTCAGATGCAATATTGTCAATGGTTGTGAACTGTATGCCTGACCCAATTGCTGCACAATCATTTCGAATATCACGGTTGATTCCGAAGAGGGATATAATTGATACCGGTGTTGATACCAATGTATTAACTGAAGCAGATCTTGTCAAGAGATCAATTGAAGCTTGTGATTCGAGGCCTGAAGCTCCATTTGTTGCTTTTGTGTCCAAGATGTTTGCAGTTCCATCTAAAATTCTTCCACGGAGTCATGGTGAGACTACTAGTGTTTTCACTGATGATGGTGGAGATGGTGAATCAGATGAGTGCTTTCTTGCATTTGCAAGGGTATTTAGTGGGTTTCTTTTTTCTGGACAGAGAGTTTTTGTTCTTTCAGCTTTATATGACCCAACGAAAGGGGAATCAATGCACAAGCACATTCAGGAGGCTGAATTGCATTCGATTTATCTAATGATGGGCCAAGGCTTGAAACCAGTGACCTCAGTAAAAGCAGGAAACCTTGTAGCAATTCGTGGTCTTAGCCATCATATATTGAAAACTGCAACTCTTTCATCGACAAGAAATTGCTGGCCTTTCTCAAGTATGGCATTCCAGGTTGCTCCTACTCTTAGAGTGGCACTTGAGCCATCTGATCCTGGAGATATAGGTGCATTGTTGAAAGGCTTAAGGCTTTTAAATCGAGCAGACCCTTTTGTAGAGGTAACTGTTTCTGCAAGGGGAGAACATGTACTTGCTGCAGCAGGAGAAGTTCATCTCGAGAGATGCATAAAGGATTTGAAGGATAGGTTTGCCAGGGTAAGCTTGGAAGTCTCTCCACCTCTCGTATCATATAAAGAAACGATTGAAGGAGAGGCATCTAGTGTGTTGGATTATTTTAAGGTGTTGTCTGAAAGCACAGACTGTGTTACTAAGAAAACCCCAAATGGTAGATGTATTGTCAGAGTGCAGGTATTGAAACTTCCACCTGCTCTTGCTAAAGTACTTGATGAAAATTCTGACGTATTGGGAGATATTGTTGGAGTCAAGTTGGGGCAGAACTATAAAAACTTGGAAACAAAGAGATCAAGTCTGATGGAAAATGAGAATCCAACGGAAGTAGTAAAAAAACTAATAGCAGATGCAGCATGTACTGATCTATCTTCAAAGGATGACCATGAAGGCAGTCGGGTTGACAAACACAATGCACTGTGGTCAAAGCTTCTCAAGCGAATTTGGGCACTTGGACCACAGCAGATTGGTCCTAACATTCTAATTAGCCCAGATCCCAAAGTAAAGGATCCTGATGGCTCTGTTCTTATTCGGGGTTCACCTCATGTGTCACAGAGATTGGGTTTTGTGGACGATTCTTTAAATGGTAATTTGGATCCTAAAACATCTTTGGAAGGTGATATGTCTTCTGCAGCATCACCGGAAGGAACTCAGACGCAATGTATGGAAGCAGCATCTCTCGAGAACAGTGTTCTATCTGGATTTCAGCTTGCTACATCAGCTGGGCCATTATGTGATGAACCTATGTGGGGGTTGGCATTTATTGTTGATGTCTCTATTTCTTCATTGTCTGGGAATTCAGATGAATCTGAATCTCCCTTTCAACCAGACAACAATGCTATCTTTTCTGGTCAAGTTATGACAACTGTAAAGGATGCCTGTAGAGCAGCTGTGCTTCAAAAGAAACCACGGCTTGTTGAAGCCATGTACTTCTGTGAATTGAATACTCCCACTGAGTATTTGGGTCCAATGTATGCTGTACTCGCACGAAGGCGAGCCCGGGTTTTGAAAGAAGAAATGCAGGAAGGTTCACCTCTGTTTACTGTGCATGCATACGTGCCTGTGTCAGAAAGCTTTGGTTTTGCAGATGAATTAAGGAGATGGACTTCTGGAGCAGCGAGTGCTCTTTTAGTGCTTAGCCATTGGGAAGAACTATGTGAAGATCCTTTTTTTATCCCCAAAACGGAAGAAGAACTAGAAGAGTTTGGAGATGGTTCTAGCGTGCTTCCCAACACAGCAAGAAAGCTCATTGATACTGTAAGACGGCGTAAGGGTCTTCCAGTGGAAGAAAAAGTTGTACAACATGCAACAAAGCAGAGAACTTTGGCTCGGAAAGTATAA 3108 42.73 MDDLETRRIRNICILAHVDHGKTTLADHLIAASGGGLIHPKMAGRLRFMDYLDEEQRRAITMKSSSIGLRYKEYSINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLAPCLVLNKIDRLICELKLSPMEAYTRLLRIVHEVNGIMSGYKSEKYLSDVDSILAGSSGEVNDENLEFIEDDEEDTFQPQKGNVVFVCALDGWGFGINEFAEFYASKLGANVSALKKALWGPRYFNPKTKMIVGKKAMAGGSKARPMFVQFVLERLWEVYGAALETDGNKEVLQKVNSTFNLTIPARELSNKDPKVVLQAIMSRWLPLSDAILSMVVNCMPDPIAAQSFRISRLIPKRDIIDTGVDTNVLTEADLVKRSIEACDSRPEAPFVAFVSKMFAVPSKILPRSHGETTSVFTDDGGDGESDECFLAFARVFSGFLFSGQRVFVLSALYDPTKGESMHKHIQEAELHSIYLMMGQGLKPVTSVKAGNLVAIRGLSHHILKTATLSSTRNCWPFSSMAFQVAPTLRVALEPSDPGDIGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKDRFARVSLEVSPPLVSYKETIEGEASSVLDYFKVLSESTDCVTKKTPNGRCIVRVQVLKLPPALAKVLDENSDVLGDIVGVKLGQNYKNLETKRSSLMENENPTEVVKKLIADAACTDLSSKDDHEGSRVDKHNALWSKLLKRIWALGPQQIGPNILISPDPKVKDPDGSVLIRGSPHVSQRLGFVDDSLNGNLDPKTSLEGDMSSAASPEGTQTQCMEAASLENSVLSGFQLATSAGPLCDEPMWGLAFIVDVSISSLSGNSDESESPFQPDNNAIFSGQVMTTVKDACRAAVLQKKPRLVEAMYFCELNTPTEYLGPMYAVLARRRARVLKEEMQEGSPLFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEELCEDPFFIPKTEEELEEFGDGSSVLPNTARKLIDTVRRRKGLPVEEKVVQHATKQRTLARKV* 1036
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10347641 10350748 - CsaV3_7G021670.1 Csa07g01078 536641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01078 1035 CDD EF2_snRNP_III 534 605 - -
Csa07g01078 1035 CDD eEF2_snRNP_like_C 896 974 - -
Csa07g01078 1035 Gene3D - 629 890 IPR014721 -
Csa07g01078 1035 MobiDBLite consensus disorder prediction 785 804 - -
Csa07g01078 1035 Gene3D Yeast translation eEF2 (G' domain) 224 333 - -
Csa07g01078 1035 TIGRFAM small_GTP: small GTP-binding protein domain 9 138 IPR005225 GO:0005525
Csa07g01078 1035 SUPERFAMILY EF-G C-terminal domain-like 896 994 IPR035647 -
Csa07g01078 1035 SMART EFG_C_a 893 982 IPR000640 -
Csa07g01078 1035 Gene3D Translation factors 350 531 - -
Csa07g01078 1035 SUPERFAMILY EF-G C-terminal domain-like 532 606 IPR035647 -
Csa07g01078 1035 CDD aeEF2_snRNP_like_IV 605 900 - -
Csa07g01078 1035 SUPERFAMILY Translation proteins 388 528 IPR009000 -
Csa07g01078 1035 CDD EF2_II 397 519 - -
Csa07g01078 1035 PANTHER ELONGATION FACTOR-LIKE GTPASE 1 4 1034 - -
Csa07g01078 1035 SUPERFAMILY Ribosomal protein S5 domain 2-like 608 895 IPR020568 -
Csa07g01078 1035 Pfam Elongation factor Tu GTP binding domain 8 338 IPR000795 GO:0003924|GO:0005525
Csa07g01078 1035 CDD EF2 10 232 - -
Csa07g01078 1035 MobiDBLite consensus disorder prediction 777 804 - -
Csa07g01078 1035 PRINTS GTP-binding elongation factor signature 11 24 IPR000795 GO:0003924|GO:0005525
Csa07g01078 1035 PRINTS GTP-binding elongation factor signature 57 65 IPR000795 GO:0003924|GO:0005525
Csa07g01078 1035 PRINTS GTP-binding elongation factor signature 77 87 IPR000795 GO:0003924|GO:0005525
Csa07g01078 1035 PRINTS GTP-binding elongation factor signature 93 104 IPR000795 GO:0003924|GO:0005525
Csa07g01078 1035 PRINTS GTP-binding elongation factor signature 129 138 IPR000795 GO:0003924|GO:0005525
Csa07g01078 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 348 IPR027417 -
Csa07g01078 1035 Gene3D Elongation Factor G (Translational Gtpase), domain 3 532 609 - -
Csa07g01078 1035 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 7 239 IPR000795 GO:0003924|GO:0005525
Csa07g01078 1035 Gene3D - 2 209 IPR027417 -
Csa07g01078 1035 Pfam Elongation factor G C-terminus 894 977 IPR000640 -
Csa07g01078 1035 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 4 1034 - -
Csa07g01078 1035 Gene3D - 892 1027 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01375 Csa-Chr6:11678326 Csa07g01078 Csa-Chr7:10347641 3.22E-134 dispersed
Csa06g01377 Csa-Chr6:11732331 Csa07g01078 Csa-Chr7:10347641 1.13E-140 dispersed
Csa07g00327 Csa-Chr7:2427130 Csa07g01078 Csa-Chr7:10347641 1.03E-25 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01078 K14536 - csv:101220903 2031.53