Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01097 ATGGACGGCGGCAGAACTGCCCTAACCACCGCTCTCTGGCGGTCCTTCAGAAACGGCGATTTCGAAGAAGAAGACGTCTGGAATGTTCTCAACGAGAAATCCAAAACCACCTCCTATCATTCCAGTTTCCCCACCGATTCATCCATTATGGAATCCCCCTTTCTCCCCTCCGCTTCCAGAATGATTCCGAGGCCCAACGGCGGCGTGGGTGCTCAAATTGGGTCCATTCCGCAGTGGTCGAAAACCGAGAGAAGAAAAAACCCTAGGAATAGGAAAAGAGTTCCGCCGCATGAATTGATAGCAAAGAGATTGGCTAGGGCTCAGATATCGTCGTTCTCGGTGTTTGAAGGAGCTGGAAGAACTTTGAAAGGAAGGGATCTGAGTAAAGTAAGAAATGCTGTTCTAACCAAAACTGGATTTCTTGAATCCCTATGA 435 48.74 MDGGRTALTTALWRSFRNGDFEEEDVWNVLNEKSKTTSYHSSFPTDSSIMESPFLPSASRMIPRPNGGVGAQIGSIPQWSKTERRKNPRNRKRVPPHELIAKRLARAQISSFSVFEGAGRTLKGRDLSKVRNAVLTKTGFLESL* 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10572223 10572774 + CsaV3_7G021860.1 Csa07g01097 536660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01097 144 Pfam Senescence regulator 74 142 IPR007608 -
Csa07g01097 144 MobiDBLite consensus disorder prediction 62 96 - -
Csa07g01097 144 PANTHER CYTOSKELETON-REGULATORY COMPLEX PROTEIN END3, PUTATIVE ISOFORM 9-RELATED 83 142 - -
Csa07g01097 144 PANTHER CYTOSKELETON-REGULATORY COMPLEX PROTEIN END3, PUTATIVE ISOFORM 9-RELATED 9 68 - -
Csa07g01097 144 PANTHER EXPRESSED PROTEIN 9 68 - -
Csa07g01097 144 PANTHER EXPRESSED PROTEIN 83 142 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01097 - - - csv:105436118 267.314
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02278 Csa-Chr1:19930439 Csa07g01097 Csa-Chr7:10572223 8.51E-13 dispersed
Csa06g03518 Csa-Chr6:28688668 Csa07g01097 Csa-Chr7:10572223 3.35E-23 dispersed
Csa07g01097 Csa-Chr7:10572223 Csa03g03273 Csa-Chr3:29907917 1.12E-12 dispersed
Csa07g01097 Csa-Chr7:10572223 Csa01g01073 Csa-Chr1:6660711 1.09E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g521 . . . . Bpe09g00173 . Bma10g00550 . . . Cma01g01126 . . Car09g00871 Sed07g2679 Cpe06g00772 Cpe02g00776 Bhi09g01651 Tan01g4559 Cmetu01g2194 . Hepe01g1267 Mch11g1195 . . . . . . . . Cone6ag0054 Cone9ag0065 . . Lsi02g01900 Csa07g01097 . . Blo07g00903 Blo10g00835 Bda05g00719 Bda12g00911 . Bpe03g00791 . . . Cmo01g01177 Cmo09g00954 . . . . . . . . . . . . . Cla09g01013 Cam09g1070 Cec09g1070 Cco09g1088 . . Cre09g1034 . . . Cme01g01027
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009247 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01097 Csa_Chr07 FPKM 20.651228 20.298618 16.017838 17.89212 42.524666 42.946316 43.415287 2.202959 2.011939 1.891999