Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01101 ATGGGTCAGATCGTGAAGAGGAAGAAGAAAGGTAGACCATCGAAGGCAGATCTGGCACGGCGGTCCGGTGGAGGACTAACATCGTCGGAATCTGAACCTCGGCGGAGTCTCCGTCGCCGGAATGTGAGGTACAACATCGATTACGACGACTTTCTTGAAGAAGACGATGAGGATGAGGAAGAGGACGAGAGGAGGAGAGAGAAGAAGCTTAAGCTTGTTGTGAAGCTGAACCAAGGAAGAGATGGAACGCATCTATCTCCAGTGGATGGAGTTTCTAGGTTAGAGGCGCGTGATTTACACGCGCCCGAGTATGGTTCTTCGGCTTCGGAAGGTGAAGAAGATGAACCGGAGAGGAAGCCATTGAAGAAGAGGAGGATTGGTGGTGGTGAAGAAGAGGATGAAGATGATGAGTACGACGATCAAATTCGTGGAGATGAAAATGAAGACGATGACATTGATGAGGAAAGGGGGGGAAGGAAGGTGGGCTCAAAAGGGTCCGACTCTGTTCCAGGGACGCCATCAGATCGATCATCTGGGTTACCATTACCTGATAAGAAGACATTGGAGTTGATTCTTGACAAACTTCAGAAGAAGGATACTTATGGTGTCTATGCGGAACCAGTTGATCCTGAAGAGCTGCCTGACTATCACGATGTCATTGATCATCCTATGGACTTTGCTACCGTGAGGAATAAGTTGGCCAACGGATCATATTCAACTTTGGAACAGTTCGAGAGTGATGTTTTCTTGATATGCTCCAATGCAATGCAATACAATTCACCAGAAACCATTTACCATAAACAGGCACGTTCTATTCAAGAGCTAGCCAAGAAGAAATTCGAGAGAGTAAGAAATGAAGTTGAACGCTCTGAGAAAGAGTTGAAGTTGGAGCAGAGTGCAAAATCCAATTCTTACATCAAGAAGCAACCACCAAAGAAACCCTTTTTCAGGACTTTGCAGGAACCTATTGGATCAGATTTTTCCTCAGGTGCGACCCTTGCTGCCACTGGAGATGTACAGAACAGTTCCAATCCAATCCAAGCTGTCAACTACGAGGTGCCTAGCAATATTGACGGGCAAGTAGAGGGTAGTTCCTCCCTCTTTGATACTACTGTTCAGGACAAGGCTGAAGAGCTCTTCTCAGGAAGGGGTCTTCTAGGTAAATTGGGGAGGAAGTCATCTGTGCTTGATGACAACCGCCGTGCTACTTACAACCTTTCTATTTCACCAGCGCCAAGATCAGAGTCAATATTTTCAACCTTTGAGGACGAAATAAGACAGTTTGTTGCGGTGGGGCTTCATGCAGAGTATTCATATGCTAGGAGTCTGGCTCGATTTGCTGCAACTCTAGGTCCAATTGCTTGGAAAGTTGCCTCCCAGAGGATTGAGCAGGCTGTACCTGTTGGATGTAAATTTGGTCGTGGTTGGGTTGGCGAATATGAGCCACTTCCAACTCCTGTATTAATATTTGAGAACCAAAACCAGAAGGAACCTGGTTTGAATAATAACTTGCATTCTACCAGCGCATTAAGAAAGGATGCAAAGCCTTCAGATACACCTTTGCCAAAGCAGGAACATTCTCTTAGTGCACCAAGTACTGAAGTGAGTGGAATTGCTAGAGGATCCACCTTAGATGGGAAATCATCTTTCCTTAAGTCGTCTACGCCAAATCCCGGTCCTCTGCAAAACCTGCAGACCAAGCATTTTACTGAGGTAGAGAAGGTTAAAAAGCAAGTTGAGTTAAATTCCTTGCCCTCACCAAAACAAAACAAAATAGATCTTGGTGTGGAGAAGCAAGCGAATTCAAATGCAACCACTTCGAGGTCTAGAGATATGTCTTCCGTAAACTTAAATCTTGTTCAATCTCTGCCTTATAAACTGCCTGGTGTTAATGGCGTTGTAACTGGAGGATTGCCTAATGGAAAATTCCCAAGCAGTTGTTTAAGTAGTCCACGGGCTGTATTATCATCTTCTAGCTTGCCATCTCAAACAGCCCCAGTGGCAACTTCTCATGGACAGGACCTGGGTCCCAGTAAGCCAGTACAATTGATGAGAATGATGTCTGAAAGAGCCCCAAAACAAGAGAACTCATCCAATCAATCTTCATCTGATTCTCCGTCAGCTTTGTCATCAGTTCCTTCTGCAATGAGAGACGATTCTAACAATGCTGCAGCGTTAGCTTCTCGTGCATGGATGTCCATTGGGGCTGGAGGGTTTAAACAAGTCAGAGAAAATTCCACACCTAAAAGTCAAATCTCAGCAGATTCATTGTATAATCCAGCTCGGGAGTTTCATCCGCAGATGACACGAGCATGGGGGGAGTTTCGTGCCGCAGGCAATCAGCCCCAATTAGAGAGGAGCAATTTCCCTATGCAGGCATTTGTTTCACAAGGCACTCTTGTGCCAAATGAACAACAGCTGCAAAATCGGTCCATGATTTACCCTCAGCTAGTCCAAGCTGACATGTCTAAGTTCCAGTTGCAGTCGACTTGGCGAGCTCTCAGTCCACATAACCAACCAAGAAAGAAACAGGAAATGCTTCCTCCTGACTTGAATATTGGGTTTCAGTCTCCTGGGTCTCCCGTGAAACAATCCTCTAGCGTTTTGGTTGACTCCCAACAGCCAGACCTAGCCTTGCAACTTTAA 2646 45.73 MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRRRNVRYNIDYDDFLEEDDEDEEEDERRREKKLKLVVKLNQGRDGTHLSPVDGVSRLEARDLHAPEYGSSASEGEEDEPERKPLKKRRIGGGEEEDEDDEYDDQIRGDENEDDDIDEERGGRKVGSKGSDSVPGTPSDRSSGLPLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIDHPMDFATVRNKLANGSYSTLEQFESDVFLICSNAMQYNSPETIYHKQARSIQELAKKKFERVRNEVERSEKELKLEQSAKSNSYIKKQPPKKPFFRTLQEPIGSDFSSGATLAATGDVQNSSNPIQAVNYEVPSNIDGQVEGSSSLFDTTVQDKAEELFSGRGLLGKLGRKSSVLDDNRRATYNLSISPAPRSESIFSTFEDEIRQFVAVGLHAEYSYARSLARFAATLGPIAWKVASQRIEQAVPVGCKFGRGWVGEYEPLPTPVLIFENQNQKEPGLNNNLHSTSALRKDAKPSDTPLPKQEHSLSAPSTEVSGIARGSTLDGKSSFLKSSTPNPGPLQNLQTKHFTEVEKVKKQVELNSLPSPKQNKIDLGVEKQANSNATTSRSRDMSSVNLNLVQSLPYKLPGVNGVVTGGLPNGKFPSSCLSSPRAVLSSSSLPSQTAPVATSHGQDLGPSKPVQLMRMMSERAPKQENSSNQSSSDSPSALSSVPSAMRDDSNNAAALASRAWMSIGAGGFKQVRENSTPKSQISADSLYNPAREFHPQMTRAWGEFRAAGNQPQLERSNFPMQAFVSQGTLVPNEQQLQNRSMIYPQLVQADMSKFQLQSTWRALSPHNQPRKKQEMLPPDLNIGFQSPGSPVKQSSSVLVDSQQPDLALQL* 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10640198 10647677 - CsaV3_7G021900.1 Csa07g01101 536664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01101 881 MobiDBLite consensus disorder prediction 522 565 - -
Csa07g01101 881 Coils Coil 273 300 - -
Csa07g01101 881 MobiDBLite consensus disorder prediction 494 510 - -
Csa07g01101 881 MobiDBLite consensus disorder prediction 857 881 - -
Csa07g01101 881 Gene3D - 183 304 IPR036427 GO:0005515
Csa07g01101 881 MobiDBLite consensus disorder prediction 494 565 - -
Csa07g01101 881 MobiDBLite consensus disorder prediction 1 184 - -
Csa07g01101 881 MobiDBLite consensus disorder prediction 111 130 - -
Csa07g01101 881 SMART bromo_6 177 285 IPR001487 GO:0005515
Csa07g01101 881 CDD Bromodomain 184 280 - -
Csa07g01101 881 ProSitePatterns Bromodomain signature. 202 258 IPR018359 -
Csa07g01101 881 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 881 - -
Csa07g01101 881 MobiDBLite consensus disorder prediction 32 48 - -
Csa07g01101 881 MobiDBLite consensus disorder prediction 1 15 - -
Csa07g01101 881 SUPERFAMILY Bromodomain 166 288 IPR036427 GO:0005515
Csa07g01101 881 MobiDBLite consensus disorder prediction 131 152 - -
Csa07g01101 881 MobiDBLite consensus disorder prediction 835 881 - -
Csa07g01101 881 ProSiteProfiles Bromodomain profile. 196 266 IPR001487 GO:0005515
Csa07g01101 881 MobiDBLite consensus disorder prediction 691 718 - -
Csa07g01101 881 Pfam Bromodomain 190 270 IPR001487 GO:0005515
Csa07g01101 881 MobiDBLite consensus disorder prediction 582 613 - -
Csa07g01101 881 MobiDBLite consensus disorder prediction 647 720 - -
Csa07g01101 881 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 881 - -
Csa07g01101 881 PRINTS Bromodomain signature 213 229 IPR001487 GO:0005515
Csa07g01101 881 PRINTS Bromodomain signature 229 247 IPR001487 GO:0005515
Csa07g01101 881 PRINTS Bromodomain signature 247 266 IPR001487 GO:0005515
Csa07g01101 881 MobiDBLite consensus disorder prediction 647 671 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01101 K22184 BRD9; bromodomain-containing protein 9 - csv:101204699 1607.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02708 Csa-Chr4:26182005 Csa07g01101 Csa-Chr7:10640198 6.61E-64 dispersed
Csa07g01101 Csa-Chr7:10640198 Csa01g00073 Csa-Chr1:433234 3.23E-13 dispersed
Csa07g01101 Csa-Chr7:10640198 Csa07g00186 Csa-Chr7:1513850 5.19E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01101 Csa_Chr07 FPKM 6.286788 6.698049 0.166301 0.356804 17.736864 17.647879 19.936237 0.0 0.043409 0.0