Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01104 ATGAGTTTTGGAGTCGTAAGGCGACGGATTGCGTCTGGAGGCTCTAATCTGTTTTCTGCGCAGTATTTGCGGGGAATTCGACCTTCCATTTCTGCAGGAAGAGTTCGTTCTGTTGCTGAGAAAGAGATTTTGCACCAGTGTAGAAGCTTCGGACATGTCAGAAATATTTCTCACCTATTTTCACCTGGTGGCCTTGCAAGTTCTCAATCTCTAAGGGTAGCATTTTCAAGTATGCAGCAAAGACCTATGATACAAATGAATGGTCGGAATTTCTCTTCAGATAATGGGGACCTGCTTGATGTTGTTGTCCCTCCATTGGCTGAGTCTATTACTGATGGAACGCTGGCAAAATTCTTGAAGAATCCGGGTGATAGAGTAGAATTGGATGAAGCAATTGCTCAAATTGAAACAGATAAGGTTACAATTGATGTCACTAGTCCAGGAGCTGGTATTATTCAGAAGTTTGTTGCCAAGGAAGGAGATACGGTGGAACCAGGAACCAAGGTTGCTATTATCTCAAAAACTGGTGAAGGTGTAACTCATGTTGCTCCTTCTGAGAAAACATCAGAGCAAGCTGCACCTCAGGCTGCCCCAGCTGAAAAAATTGAAAAGCCTAAAGCTGAAACTACGGTCAGTGAGAAGCCGAAGCCTAAGGCACCATCTCCACCACCTCCAAAACGGTCAGCTACAGAACCCCAGCTTCCACCTAAGGATAGGGAAAGACGAGTTCCAATGACAAGGCTCCGAAAGAGGGTTGCTACACGATTGAAAGATTCTCAGAACACATTTGCTATGTTGACGACGTTCAATGAAGTTGACATGACAAATTTGATGAAGCTTCGTTCTGATTACAAGGATGCTTTCGTAGAAAAGCACGGAGTCAAGTTGGGTCTTATGTCTGGATTTATCAAAGCTGCTGTCAGTGGGCTTCAGAATCAACCTATTATTAATGCTGTGATCGATGGGGATGATATCATATACAGAGACTACATCGACATCAGCATAGCCGTTGGCACTCCTAAGGGTCTTGTTGTGCCAGTCATTAGAAATGCTGATAAGATGAATTTTGCTGAGATAGAGAAGGAGATAAACACCCTTGCAAAGAAGGCAAATGATGGTACCATTTCAATTGACGAGATGGCTGGAGGTTCCTTCACCGTATCCAATGGTGGTGTTTATGGAAGCCTTTTGAGTACCCCCATTATTAATCCTCCTCAGTCGGCAATCTTGGGAATGCACTCGATCGTGTCCCGTGCTGTGGTGGTTGGAGGCAATGTTGTCCCGAGGCCAATGATGTACATCGCTCTAACATATGACCATAGACTCATTGATGGAAGAGAGGCAGTTTTCTTCTTGCGCCGCATCAAAGATGTGGTCGAAGACCCAAGGAGACTTCTCCTTGACATATAA 1410 44.54 MSFGVVRRRIASGGSNLFSAQYLRGIRPSISAGRVRSVAEKEILHQCRSFGHVRNISHLFSPGGLASSQSLRVAFSSMQQRPMIQMNGRNFSSDNGDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTIDVTSPGAGIIQKFVAKEGDTVEPGTKVAIISKTGEGVTHVAPSEKTSEQAAPQAAPAEKIEKPKAETTVSEKPKPKAPSPPPPKRSATEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDAFVEKHGVKLGLMSGFIKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADKMNFAEIEKEINTLAKKANDGTISIDEMAGGSFTVSNGGVYGSLLSTPIINPPQSAILGMHSIVSRAVVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEDPRRLLLDI* 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10670991 10681232 + CsaV3_7G021930.1 Csa07g01104 536667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01104 469 PANTHER SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE, PUTATIVE-RELATED 3 469 - -
Csa07g01104 469 MobiDBLite consensus disorder prediction 177 248 - -
Csa07g01104 469 CDD lipoyl_domain 100 172 - -
Csa07g01104 469 Pfam Biotin-requiring enzyme 101 172 IPR000089 -
Csa07g01104 469 Gene3D - 225 465 IPR023213 -
Csa07g01104 469 SUPERFAMILY Single hybrid motif 99 190 IPR011053 -
Csa07g01104 469 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 3 469 - -
Csa07g01104 469 TIGRFAM sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 208 468 IPR006255 GO:0004149|GO:0006099|GO:0045252
Csa07g01104 469 MobiDBLite consensus disorder prediction 216 231 - -
Csa07g01104 469 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 123 152 IPR003016 -
Csa07g01104 469 SUPERFAMILY CoA-dependent acyltransferases 239 468 - -
Csa07g01104 469 MobiDBLite consensus disorder prediction 232 248 - -
Csa07g01104 469 ProSiteProfiles Biotinyl/lipoyl domain profile. 98 173 IPR000089 -
Csa07g01104 469 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 239 467 IPR001078 GO:0016746
Csa07g01104 469 Gene3D - 99 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01104 K00658 DLST, sucB; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] - csv:101204042 849.351
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g01104 Csa-Chr7:10670991 Csa07g01323 Csa-Chr7:13128262 2.26E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g536 . . . . Bpe09g00166 . Bma10g00562 Bma13g01068 . . Cma01g01120 Cma09g00960 Car01g00994 Car09g00875 Sed07g2678 Cpe06g00776 Cpe02g00780 Bhi09g01660 Tan01g4573 Cmetu01g1279 . . Mch11g1200 . . . . . . . . . . Cone14ag1156 . Lsi02g01894 Csa07g01104 . . Blo07g00897 Blo10g00841 . Bda12g00921 . Bpe03g00785 . . . Cmo01g01170 Cmo09g00960 . . . . . . . . . . . . . Cla09g01019 Cam09g1075 Cec09g1075 Cco09g1094 . . Cre09g1040 . . . Cme01g01018
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003198 2 2 3 4 3 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 3 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01104 Csa_Chr07 FPKM 0.493157 0.469961 0.118803 0.077033 0.599059 0.452995 0.606536 0.195393 0.555177 0.251383