Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01108 ATGGACTGGACCAGAGGCCCCCCCGTCGGCCGCGGCTCCTCCGCCACCGTCTATATGGCTACAATCAACTCATCCGGCCAACAATTCGCCGTCAAATCCACCGACTTTGCATCATCGGCTCTGTTGCAGAAGGAACACGCTCTTCTCTCCAATTTGAGCTCCCCATACCTAATTAAGTCCCTAGGTTTCGACGTTGAAACCCAACCCTTCAATCCCCCGGTGTTCAATCTCTTCATGGAGTATTTGCCGGAGGGGACTCTGTGGGACGCGATTCAGAGCAACGGCGGTCGAATTGAGGAATCGATGATCCGAGTGTTTTCGCGGCAGATTCTCAAAGGATTGGACTACCTTCATGCTAATGGATTGGCACATTGCGATATCAAGAGCCGGAATCTGTTACTGAGTGATGGGGATTTGAAAATTGCCGATCTAGGTTGTGCGAAATTTGTGGATGGAATTTCCGGTAATGGAGTTGGGGCTTTTTCTGGTTCGCCGGCGTTCATGGCGCCGGAAGTTGCAAGAGGTGAAGAACAGGGATTTCCGGCCGATGTTTGGGCTTTTGGATGTACAGTCATTGAAATGGCTACTGGGGATCATCCATGGCCGGAAATAGAGGATCCGGTTTCGGCGTTGTATCGGATTGGATTTTCCGGCGAGTTACCAGAGATTCCGCGGTGGTTGTCGGAAATTGCGAGGGATTTTGTCGCCAAGTGTTTGATAAAAGACTCGAAAGAAAGATGGAGTGTGAAACGGCTTCTCGAGCATCCGTTTCTTCAAGAACTTGATTCTGAATCGGAAATTGAAGGGTCGAGGATGAAAATGGTGAATTCTTCTTCTCCGAGCTGTGTTTTGGATCAGAGGTTTTGGGATTCAATGGAAGATTTGGAGACTCCATGGAAGGTGACTCAACAAGCTTCTTTGGTGGATTGTCCAGCTGAGAGGATTAGAAGGTTGGCTGATAATTTCTCTTGCGATTTGGAATTGGAATGGGATGATGGAGACTGGGTTTTGATCAGAAACAATGGGGTCGGCGGTGGAAGCCATGGAAATGGATCTGTGAGCATAGATTTTTGTGCTACAGTTGAAGAAGAAGATGAAAATTTGAACTCGGAAATTGAAGAAAATTCTGTATTGTTCTGTTTAGTTGATGATGATTTTAGTGTTGTGAACAGTAGGAAAGGAGGATTACAAATGGAATTAAAGAGTGATTTTATGTTGGAAACTGTTGAAAACTATTTTTCTTTTACACTAATCCAAATTCATCTCCTATTTCCTCATGATCTTCATCTTCTTCTTTTGTTTCTTTTTCCAAATTTGACATGCCTCTTTGCCTTGTTCAACAATTATGGTTTGGTCAGAATGTCATTCCAAAATTTTCCATATCGTTTTGCACTAATAGAGTTCTATCTATCCATTGTATTGATAAACAGATTCAATTTAACTATTTTAGTATCACATTTTTGTTGTTAG 1470 43.74 MDWTRGPPVGRGSSATVYMATINSSGQQFAVKSTDFASSALLQKEHALLSNLSSPYLIKSLGFDVETQPFNPPVFNLFMEYLPEGTLWDAIQSNGGRIEESMIRVFSRQILKGLDYLHANGLAHCDIKSRNLLLSDGDLKIADLGCAKFVDGISGNGVGAFSGSPAFMAPEVARGEEQGFPADVWAFGCTVIEMATGDHPWPEIEDPVSALYRIGFSGELPEIPRWLSEIARDFVAKCLIKDSKERWSVKRLLEHPFLQELDSESEIEGSRMKMVNSSSPSCVLDQRFWDSMEDLETPWKVTQQASLVDCPAERIRRLADNFSCDLELEWDDGDWVLIRNNGVGGGSHGNGSVSIDFCATVEEEDENLNSEIEENSVLFCLVDDDFSVVNSRKGGLQMELKSDFMLETVENYFSFTLIQIHLLFPHDLHLLLLFLFPNLTCLFALFNNYGLVRMSFQNFPYRFALIEFYLSIVLINRFNLTILVSHFCC* 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10703813 10705282 - CsaV3_7G021970.1 Csa07g01108 536671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01108 489 CDD STKc_MAPKKK 2 258 - -
Csa07g01108 489 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 358 - -
Csa07g01108 489 Gene3D Transferase(Phosphotransferase) domain 1 2 311 - -
Csa07g01108 489 ProSiteProfiles Protein kinase domain profile. 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01108 489 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Csa07g01108 489 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 15 1 358 - -
Csa07g01108 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Csa07g01108 489 SMART serkin_6 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01108 489 SUPERFAMILY Protein kinase-like (PK-like) 3 301 IPR011009 -
Csa07g01108 489 Pfam Protein kinase domain 7 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02662 Csa-Chr2:23201960 Csa07g01108 Csa-Chr7:10703813 2.03E-103 dispersed
Csa06g03499 Csa-Chr6:28626745 Csa07g01108 Csa-Chr7:10703813 1.20E-97 dispersed
Csa07g01108 Csa-Chr7:10703813 Csa06g02446 Csa-Chr6:21834105 7.08E-49 dispersed
Csa07g01108 Csa-Chr7:10703813 Csa07g00349 Csa-Chr7:2582930 6.69E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78483 PF00069 Pkinase 3.70E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01108 K20716 - csv:101205426 943.725