Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01122 ATGACTTTTTCATGGGGGATGAGATCATGGTTCTACATTTTACTGCTAATAATCTCCGTGGAGGCTGACAACGACGTAGCTTACGATCAGTTGCCTATCGCCTTGCCAGGCTGCTTGTACCGATGCGGTGAAGTGGAGATTCCCTACCCATTTGGGCTCACTCCTGAATGCTCTCTCAATGACGCATTTCTTGTCACTTGCAATGACTCCTTTAATCCCAACAAGCCCTTCGTCCGCCATGTTCCGATCACGAGTATTTCGGTCGATGATGGGGAGTTGGGTATTAAAAGTCCTGTGGCCAACTATTGTTTTGATGGCAATGGGAACGTCTCTGGAAAAAACGAAACGTTTCTCGAATCCAACCAGTTCACCATCTCGACGAAGAACATCATCACTGTCATCGGTTGTAGTACTATCTCGACGATCAGCGGCACTTTCCAGGGAAACGAGAATTACTTAACAGCATGTGCGTCATTCTGTAGTAGCTACCGTAATATGCCGAATGGGTCGTGCTCCGGCGTCGGGTGTTGCCAAGTGACAATTCCCGGCGGATTGAATCAAATGCATGTAACGGTCACAGGGGGTGACATAACGAACGGATCGGATATATATTCATGTGGATATGGCTTCGTGGTGGAAGAGAGTGAGTTTAAGTTTTCATCGGCTTATGTTCCCCACTACCCGAACGCCACCGTGTCGACGGTGTTGGACTGGTCCGTTGGCAACGAGTCCTGTTTGGAGGCTATAGATAGCCAAAGCTATGTCTGTCAAGGAAATAGCAGTTGCCTAAACCGAGACCTTATGGAGGGTTACCGCTGCAAGTGCTTGGATGGGTTCATTGGGAATCCATATTTGCCACACATTGGGTGCCAAGACAAAAATGAATGTGATGATCCTAATGAGAATGAGTGTACAAATACGTGTACAAATACAGTAGGAAGTTATGAATGTAAATGCCCACATGGATACTCCGGCGATGGGAGAAAGAACGGCATTGGTTGTGTTCGCCGCCGCCGCCATCCTCATGTTCTTATACTATATTTTGGGGTGGTGGTGGGTATAATGGGGCTAATGGTAAGCTGCTCTTGGTTATATATCGGCTTCAAGAGATGGAAGCTCATCAAACTCAAAGCAAAATTCTTCCGAAGAAATGGAGGATTAATGTTAGAGCAACAACTTCCCATCCGAGACGAAGCTGCACAAACCGCTAAAATTTTCACTGCAGAGGAATTACAAAAAGCCACTAACAACTACTCCGACGACCGGATCGTCGGCAAAGGCGGATTCGGAACTGTCTACAAAGGCATCCTCCCTAACGGCGCCGCCGTTGCCATCAAGAAGTCTAAGATCGTCGATAAAACCCAGACCAAACAGTTCGTTAACGAAGTCATTGTTCTCTCCCAAATCAATCACCGCAATACAGTCAAACTCTTAGGCTGTTGCTTGGAAGAAGAAGTTCCTCTTCTCGTCTACGAATTCGTCTCCAACGGAACCCTATTCGATCACATTCACAAGAGAAAATCTCAACGCTCCATTCCTTGGAAGACCCGCCTCAAAATCGCTTCCGAAACCGCCGGAGTTCTCTCCTATCTTCACTCCTCTGCCTCAATTCCCATCATTCACAGGGATGTCAAGTCCACCAACATTCTCCTCGACGAGAATTTTACCGCCAAGGTCTCCGACTTCGGAGCTTCGAAGCTCGTCCCGTTAGATCAGGTGGATTTGAACACGATTGTGCAAGGAACTCTCGGATACCTAGATCCAGAGTATTTGCAAACCAGTCAACTGACGGAGAAGAGCGACGTGTACAGCTTTGGCGTGGTTCTGGCGGAATTGATGACTGGAAAAGCTCCTCTGTCCTTCAGCCGATCGGAGGAAGAACGGAATCTATCGATGCATTTTCTAATCGCTATGAAGCAGAATCGTCTTGGAGAAATTCTTGATAAAGGTTTAGGCAGCGATGTGGATGAGGAACAAGTGAAGGAAGTTGCGAGCCTTGCAAAGCGGTGTTTGAGGGTGAAGGGAGAAGAAAGGCCGAGTATGAAGGAAGTTGGTGCAGAGCTTGAAGGATTGTGTCAAATGGCGTGGGGTCATCCATGGATTGTTGATGATAAATCTTCATCTGTTGAAGAAGAAGCAGAGGTTTTGGTCATTGAAGAACATAAAAAGGAAATTCCATTTGATAGTTTTCTCTTCCCCATTAACCAAATGATACCAAAACAACATCCTGCCAGGTAA 2238 46.69 MTFSWGMRSWFYILLLIISVEADNDVAYDQLPIALPGCLYRCGEVEIPYPFGLTPECSLNDAFLVTCNDSFNPNKPFVRHVPITSISVDDGELGIKSPVANYCFDGNGNVSGKNETFLESNQFTISTKNIITVIGCSTISTISGTFQGNENYLTACASFCSSYRNMPNGSCSGVGCCQVTIPGGLNQMHVTVTGGDITNGSDIYSCGYGFVVEESEFKFSSAYVPHYPNATVSTVLDWSVGNESCLEAIDSQSYVCQGNSSCLNRDLMEGYRCKCLDGFIGNPYLPHIGCQDKNECDDPNENECTNTCTNTVGSYECKCPHGYSGDGRKNGIGCVRRRRHPHVLILYFGVVVGIMGLMVSCSWLYIGFKRWKLIKLKAKFFRRNGGLMLEQQLPIRDEAAQTAKIFTAEELQKATNNYSDDRIVGKGGFGTVYKGILPNGAAVAIKKSKIVDKTQTKQFVNEVIVLSQINHRNTVKLLGCCLEEEVPLLVYEFVSNGTLFDHIHKRKSQRSIPWKTRLKIASETAGVLSYLHSSASIPIIHRDVKSTNILLDENFTAKVSDFGASKLVPLDQVDLNTIVQGTLGYLDPEYLQTSQLTEKSDVYSFGVVLAELMTGKAPLSFSRSEEERNLSMHFLIAMKQNRLGEILDKGLGSDVDEEQVKEVASLAKRCLRVKGEERPSMKEVGAELEGLCQMAWGHPWIVDDKSSSVEEEAEVLVIEEHKKEIPFDSFLFPINQMIPKQHPAR* 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10925810 10931938 - CsaV3_7G022110.1 Csa07g01122 536685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01122 745 Pfam Protein kinase domain 418 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01122 745 SMART egfca_6 245 291 IPR001881 GO:0005509
Csa07g01122 745 SMART egfca_6 292 335 IPR001881 GO:0005509
Csa07g01122 745 Gene3D Laminin 244 329 - -
Csa07g01122 745 Pfam Wall-associated receptor kinase galacturonan-binding 38 93 IPR025287 GO:0030247
Csa07g01122 745 CDD EGF_CA 292 326 - -
Csa07g01122 745 CDD EGF 251 284 - -
Csa07g01122 745 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524
Csa07g01122 745 CDD STKc_IRAK 424 691 - -
Csa07g01122 745 SMART serkin_6 418 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01122 745 SUPERFAMILY EGF/Laminin 291 328 - -
Csa07g01122 745 ProSitePatterns Calcium-binding EGF-like domain signature. 292 317 IPR018097 GO:0005509
Csa07g01122 745 ProSiteProfiles Protein kinase domain profile. 418 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01122 745 Gene3D Phosphorylase Kinase; domain 1 388 493 - -
Csa07g01122 745 ProSiteProfiles EGF-like domain profile. 292 326 IPR000742 -
Csa07g01122 745 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 24 713 - -
Csa07g01122 745 Gene3D Transferase(Phosphotransferase) domain 1 494 698 - -
Csa07g01122 745 SUPERFAMILY Protein kinase-like (PK-like) 403 688 IPR011009 -
Csa07g01122 745 Pfam Calcium-binding EGF domain 292 327 IPR001881 GO:0005509
Csa07g01122 745 SMART egf_5 295 335 IPR000742 -
Csa07g01122 745 SMART egf_5 244 291 IPR000742 -
Csa07g01122 745 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 308 319 IPR000152 -
Csa07g01122 745 SUPERFAMILY EGF/Laminin 252 282 - -
Csa07g01122 745 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672|GO:0006468
Csa07g01122 745 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 713 IPR045274 GO:0007166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02752 Csa-Chr4:26366177 Csa07g01122 Csa-Chr7:10925810 0 dispersed
Csa06g01940 Csa-Chr6:17548277 Csa07g01122 Csa-Chr7:10925810 0 dispersed
Csa06g01942 Csa-Chr6:17564988 Csa07g01122 Csa-Chr7:10925810 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78484 PF00069 Pkinase 4.20E-51 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01122 - - csv:101206607 1500.72