Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01148 ATGGCTTCCCATTCCCCTAACCTCGAGTGTCGGATGTACGAGGCAAAGTACCCGGAGGTGGATATGGCCGTCATGATTCAGGTCAAGAACATCGCCGATATGGGCGCTTACGTCTCCCTTCTTGAATACAACAACATCGAGGGTATGATTCTTTTCTCCGAGCTCTCTCGCCGTCGAATTCGTAGTGTCAGCAGCTTAATTAAGGTCGGTCGTATCGAGCCCGTCATGGTCCTTAGGGTTGACAAGGAGAAGGGATATATTGATTTGAGTAAGAGAAGGGTGTCTGAGGAGGATATTCAGGCCTGTGAGGAGAGGTATAACAAGAGCAAGCTCGTTCACTCTATAATGCGCCATGTTGCTGAAACTATGAACATTGATTTAGAGGATTTATATATCCATGTTGGCTGGCCTTTGTACCGGAAATATGGTCATGCTTTTGAGGCATTCAAGATCATTGTAACCGACCCTGACTCGGTGTTGAATTCTCTAACCCGTGAAGTCAAGGAAGCTGGTCCTGATGGACAGGAGGAAACTAAGATAGTTCCCGCAATGTCTGAGGATGTAAAAGATGCACTAATAAAGAATATTAGAAGAAGAATGACTCCCCAACCCTTGAAGGTCCGAGCTGATATTGAGATGAAGTGTTTCCAATTTGATGGTGTTCTTCACATAAAGGAAGCAATGCGTAAAGCTGAAGCGGCTGGAAATGATGATTGTCCTGTTAAAATTAAATTGGTTGCACCTCCACTTTACGTCCTTACTACCCAGACACTTGACAAGGAGCAAGGAATCACTGTTCTTGAAAAAGCTATTGCTGCTTGCACTGAGGCAATTGAGCATCACAAGGGAAAGCTTGTGGTGAAGGAGACACCCAGAGCGGTAAGTGAAAGAGATGACAAATTGCTTGCTGAGCACATGGCGAAGCTACGACAAGACAATGAAGAAATCAGTGGAGATGAGGATAGTGAGGAAGAGGAAGACACAGGGATGGGAGAAGTCGATGTTGAGAATGCAGGTCCTGGGATCACTGAGTAA 1035 45.51 MASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMNIDLEDLYIHVGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEAGPDGQEETKIVPAMSEDVKDALIKNIRRRMTPQPLKVRADIEMKCFQFDGVLHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGITVLEKAIAACTEAIEHHKGKLVVKETPRAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEVDVENAGPGITE* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11295512 11302554 + CsaV3_7G022370.1 Csa07g01148 536711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01148 344 SUPERFAMILY Nucleic acid-binding proteins 10 92 IPR012340 -
Csa07g01148 344 PANTHER BNAC04G04870D PROTEIN 5 343 - -
Csa07g01148 344 MobiDBLite consensus disorder prediction 309 344 - -
Csa07g01148 344 ProSiteProfiles S1 domain profile. 21 92 IPR003029 GO:0003676
Csa07g01148 344 Pfam Eukaryotic translation initiation factor 2 alpha subunit 130 260 IPR011488 GO:0003723|GO:0003743
Csa07g01148 344 Coils Coil 306 326 - -
Csa07g01148 344 Gene3D - 6 94 IPR012340 -
Csa07g01148 344 Pfam S1 RNA binding domain 18 92 IPR003029 GO:0003676
Csa07g01148 344 CDD S1_IF2_alpha 18 93 IPR044126 GO:0003723
Csa07g01148 344 SMART S1_6 19 92 IPR022967 -
Csa07g01148 344 Gene3D Translation initiation factor 2; subunit 1; domain 2 95 172 IPR024054 -
Csa07g01148 344 Gene3D EIF_2_alpha 205 327 IPR024055 -
Csa07g01148 344 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 5 343 IPR011488 GO:0003723|GO:0003743
Csa07g01148 344 SUPERFAMILY eIF2alpha middle domain-like 94 199 IPR024054 -
Csa07g01148 344 MobiDBLite consensus disorder prediction 316 332 - -
Csa07g01148 344 SUPERFAMILY eIF-2-alpha, C-terminal domain 203 319 IPR024055 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g01148 Csa-Chr7:11295512 Csa07g01375 Csa-Chr7:13695304 1.67E-25 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01148 K03237 - csv:101209681 648.662