Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01176 ATGTCAAATGATGAAGGGAAAAATGTGTACCAGCAGTATGATCCATTTCAATACAACCAATTGGATATGAACCGTTCAATCTTCCATCAACAAGCTGCAGCGGCGTTGGATCCTGGCTTGATGAGCTTCACTAATTTCTTCGATACCAGCTCTTTGGAATATAATAGCCTGTCGAAGGCGTTCGATGTGTCGTGCTGTTCATCTCAAGTCATTTCTGCAGTGGACGACGTGTCGAAAAAGAAGGCTTCAACGACAACCCCAAATTCTTCAGTGTCATCTTCGTCTAATGAAGCTGCAGTTGAAGAAGATTCAGTGAAGAGCAACAAATTAGAAGACATAAAAGGGCGGTGCGAGAATAAAGATGAAGAAAAGTCTAAGAAACAGAACAGCAATTTATCAAAAAAGAAAGAGAAACGGCCGAGGGAGCCCCGTTTTGCTTTCTTGACTAAGAGTGAGATTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGTCAGAAAGCAGTTAAAAATAGTCCTTACCCCAGAAGCTACTATAGATGCACCAGCCAAAAATGTGTAGTAAAAAAACGAGTTGAAAGATCATATCAAGATCCATCTGTGGTGATTACTACATATGAAGGCCAACACAACCACCATTGCCCAGCTACACTCCGAGGCCATTCTGCAGGGATCATGTCGTCTCCATTCTACGCATCAGCATCAGCATCAGTAACAGCAGCCTCATCGGGGCCTACGCTTCCCCAAGAACTCTTCTCGCATTTGTTACCAACGAATAACTGCCAAACCGACCCAGCTGCCTCGATGATGTACCAAAATTTAAGCCTTCAACAACACCTTCAATTGCCTGATCATTATGGTTTGTTGCAAGATTTATTCACTCAAAAATAG 894 42.28 MSNDEGKNVYQQYDPFQYNQLDMNRSIFHQQAAAALDPGLMSFTNFFDTSSLEYNSLSKAFDVSCCSSQVISAVDDVSKKKASTTTPNSSVSSSSNEAAVEEDSVKSNKLEDIKGRCENKDEEKSKKQNSNLSKKKEKRPREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGIMSSPFYASASASVTAASSGPTLPQELFSHLLPTNNCQTDPAASMMYQNLSLQQHLQLPDHYGLLQDLFTQK* 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11502732 11505428 + CsaV3_7G022650.1 Csa07g01176 536739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01176 297 MobiDBLite consensus disorder prediction 77 101 - -
Csa07g01176 297 ProSiteProfiles WRKY domain profile. 151 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa07g01176 297 MobiDBLite consensus disorder prediction 102 146 - -
Csa07g01176 297 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 295 IPR044810 GO:0003700
Csa07g01176 297 Gene3D WRKY domain 141 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa07g01176 297 SUPERFAMILY WRKY DNA-binding domain 149 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa07g01176 297 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 16 295 - -
Csa07g01176 297 MobiDBLite consensus disorder prediction 77 146 - -
Csa07g01176 297 Pfam WRKY DNA -binding domain 157 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa07g01176 297 SMART WRKY_cls 156 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01529 Csa-Chr3:11362956 Csa07g01176 Csa-Chr7:11502732 1.24E-44 transposed
Csa06g02060 Csa-Chr6:18415484 Csa07g01176 Csa-Chr7:11502732 1.58E-44 transposed
Csa06g03763 Csa-Chr6:29962063 Csa07g01176 Csa-Chr7:11502732 1.08E-60 transposed
Csa07g01922 Csa-Chr7:19053279 Csa07g01176 Csa-Chr7:11502732 2.16E-44 transposed
Csa06g01184 Csa-Chr6:10004976 Csa07g01176 Csa-Chr7:11502732 3.13E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32310 PF03106 WRKY 5.60E-25 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01176 - - csv:101211248 556.984