Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01177 ATGTCATCTGGAAGTAGCAGTACTTTGAATACAGAATTGTCAAAGAAAACACCCTTCCTTGGTTTGTCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTTTTGATTCTTGGTATCTTATCTGTATGGGTGATGTTTCGAAGAAAAACAAGGAGATCCCCAGAAAACTTCTCTACTTCTCAAATACCAAATATCTCGAAGGATATTAAGGTGGACAGAATCGCTACTCAATCCGCCCACCACAATCATCTTGAGAGCCTTTATATTTCTATTAATGATAAATCAAGTGAGAAGAACTCAGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCTAGTGATCCTGATAACATAAGCCAATGCAGCTCCAATTATCATCATGAAAGAGTTTTCAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGTACTGTTAGAAAACAGTCTTCAATGTCATATGGAGGGTATGGAGGCCTTGTGACTGCCTCTCCTCTCGTTGGCTTGCCTGAAATTTCACATCTTGGTTGGGGTCACTGGTTTACACTCAGGGATCTAGAATTTGCCACAAATCGTTTTGCTGCAGACAATGTGCTTGGTGAAGGGGGTTATGGGGTTGTCTATAAAGGCAGACTGATAAATGGAACTGAGGTTGCTGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATTGGTCATGTAAGACACAAGAATCTCGTACGGCTCCTTGGCTATTGCATAGAAGGAGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGGAACTTAGAGCAATGGTTACATGGGGCTATGCGACAACATGGCACCTTGACTTGGGAGGCCCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTAGCATATTTACATGAAGCAATTGAACCAAAGGTTGTTCACAGAGACATAAAATCGAGCAATATCTTAATTGATGACGAATTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAACTTTTGGATGCAGGAGAGAGTCACATCACGACTAGAGTGATGGGAACATTTGGGTATGTGGCGCCAGAATATGCTAACACTGGCTTGTTAAATGAGAAGAGCGACATTTATAGCTTTGGTGTTCTCCTTCTAGAAGCAATCACAGGAAGGGATCCGGTGGACTATGGCCGTCCTGCTAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTTGGCACAAGGAGAGCTGAGGAAGTTATTGACCCAAGTCTTGAAACTAAACCCAGTACTCGAGCTTTGAAACGGGCCCTTCTGATTGCACTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGACCCAAGTTGTTAGGATGCTGGAAGCTGATGACTACCCATCTCGTGAGGATCGGCGGAGCCAAAAGAGCAGCACAGCAAACTCAGAGATTGAATCCAGTCAAGGCGAGATTGGAAGTAAACCAGGGGAATCACAAAGCAAACCAGTAAACGCATGA 1530 43.14 MSSGSSSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENFSTSQIPNISKDIKVDRIATQSAHHNHLESLYISINDKSSEKNSEKMIGHLGMSKSSDPDNISQCSSNYHHERVFSSHSGEEGSSGTVRKQSSMSYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFAADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDPSLETKPSTRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSREDRRSQKSSTANSEIESSQGEIGSKPGESQSKPVNA* 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11510722 11516213 - CsaV3_7G022660.1 Csa07g01177 536740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01177 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
Csa07g01177 509 MobiDBLite consensus disorder prediction 463 509 - -
Csa07g01177 509 Coils Coil 214 234 - -
Csa07g01177 509 ProSitePatterns Protein kinases ATP-binding region signature. 200 223 IPR017441 GO:0005524
Csa07g01177 509 SUPERFAMILY Protein kinase-like (PK-like) 178 471 IPR011009 -
Csa07g01177 509 SMART serkin_6 194 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01177 509 MobiDBLite consensus disorder prediction 463 482 - -
Csa07g01177 509 CDD STKc_IRAK 200 466 - -
Csa07g01177 509 Pfam Protein kinase domain 197 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01177 509 Gene3D Transferase(Phosphotransferase) domain 1 270 484 - -
Csa07g01177 509 ProSiteProfiles Protein kinase domain profile. 194 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01177 509 Gene3D Phosphorylase Kinase; domain 1 176 269 - -
Csa07g01177 509 PANTHER OS10G0497600 PROTEIN 5 503 - -
Csa07g01177 509 MobiDBLite consensus disorder prediction 483 509 - -
Csa07g01177 509 PANTHER OS01G0323000 PROTEIN 5 503 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00523 Csa-Chr2:3681965 Csa07g01177 Csa-Chr7:11510722 4.87E-85 dispersed
Csa06g02950 Csa-Chr6:25534935 Csa07g01177 Csa-Chr7:11510722 2.30E-180 dispersed
Csa07g01177 Csa-Chr7:11510722 Csa07g01264 Csa-Chr7:12604981 4.23E-156 dispersed
Csa01g01296 Csa-Chr1:8249052 Csa07g01177 Csa-Chr7:11510722 1.82E-76 transposed
Csa01g02114 Csa-Chr1:18430589 Csa07g01177 Csa-Chr7:11510722 4.00E-67 transposed
Csa05g00966 Csa-Chr5:8143202 Csa07g01177 Csa-Chr7:11510722 6.59E-31 transposed
Csa05g01588 Csa-Chr5:18747036 Csa07g01177 Csa-Chr7:11510722 2.70E-69 transposed
Csa06g00019 Csa-Chr6:132740 Csa07g01177 Csa-Chr7:11510722 0 transposed
Csa06g01446 Csa-Chr6:12308600 Csa07g01177 Csa-Chr7:11510722 5.91E-68 transposed
Csa06g00506 Csa-Chr6:4282021 Csa07g01177 Csa-Chr7:11510722 2.80E-71 transposed
Csa06g01183 Csa-Chr6:9996093 Csa07g01177 Csa-Chr7:11510722 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78486 PF00069 Pkinase 6.60E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01177 - - csv:101212378 999.193