Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01184 ATGGGATTGGGAGATAAAGAATGGTATTTTTATTGCAAGAGAGGAAGGAAATACAAGAATAGCATAAGGCCAAATAGAGTAACTGGATCTGGATTTTGGAAGGCAACAGGAATAGATAAAGGTGTTTATAGTAATGGAGGTGAAGGGAATGAATGTATTGGTCTTAAGAAAACACTTGTTTATTATCGTGGAAGTGCTGGTAAAGGCTCTAAAACTGATTGGATGATGCATGAGTTTCGTCTCCCTCCTCCTAATAATCCAACCGCCGCCACCACCAACAACCCTAAACCCAACAACTTTGCTCAAGAAGCGGAAATTTGGACATTATGTAGGATATTCAAGAGGAATGTGAGTGGGAGAAGATATGGAACATCAGGAAGTAATAATTGGAATAACAAGCAATTAGCAGCAGTATCAACAACAGCAATCAAAAACCCCATCATAGATGATCAAAAGAACATAAGGCTGTGCAGTAACAACAATATTGTTGATCAAATTATTGTGCCACCACCAGCTTCTGAAAAAGGTAACAACAACAATAATAATAATGGTGAAATTAGTTACATCAACTTCAGCAGCTGTGACTCCTCCATGATTATCCAAACTGAGAAGAAGCCACTACTTCTTGATCCAAACAATTACCTCAACAACAATCATCATCATCATCATCAAGAATGGAATACCAATAATAATAGTTATGATCAATATAGCAGTTGCTCTTCAAGTGGTATCATTTCACCTTCAATTCCTTATCCAACAAATCAGCAGCTTGATATCAACGATTTCTTCACTAATAGCAATTGGGATGAGCTCAGATCAATGGTGGATATGTTGTAA 837 37.16 MGLGDKEWYFYCKRGRKYKNSIRPNRVTGSGFWKATGIDKGVYSNGGEGNECIGLKKTLVYYRGSAGKGSKTDWMMHEFRLPPPNNPTAATTNNPKPNNFAQEAEIWTLCRIFKRNVSGRRYGTSGSNNWNNKQLAAVSTTAIKNPIIDDQKNIRLCSNNNIVDQIIVPPPASEKGNNNNNNNGEISYINFSSCDSSMIIQTEKKPLLLDPNNYLNNNHHHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11620620 11622574 - CsaV3_7G022730.1 Csa07g01184 536747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01184 278 Gene3D NAC domain 1 118 IPR036093 GO:0003677|GO:0006355
Csa07g01184 278 ProSiteProfiles NAC domain profile. 1 115 IPR003441 GO:0003677|GO:0006355
Csa07g01184 278 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 242 - -
Csa07g01184 278 SUPERFAMILY NAC domain 4 115 IPR036093 GO:0003677|GO:0006355
Csa07g01184 278 Pfam No apical meristem (NAM) protein 4 81 IPR003441 GO:0003677|GO:0006355
Csa07g01184 278 PANTHER CONTAINING PROTEIN 9, PUTATIVE, EXPRESSED-RELATED 3 242 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01184 - - - csv:101211980 495.738
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa06g01174 Csa07g01184 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01172 Csa-Chr6:9901956 Csa07g01184 Csa-Chr7:11620620 2.15E-54 dispersed
Csa07g01184 Csa-Chr7:11620620 Csa06g01174 Csa-Chr6:9919247 7.34E-50 dispersed
Csa06g01171 Csa-Chr6:9888226 Csa07g01184 Csa-Chr7:11620620 3.91E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1019 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01811 . . . . . . Cone6ag0270 Cone9ag0304 . . . Csa07g01184 . . . . . . . . . . . . . . . . . . . Bhi10g00974 . . . . . . . . . . . . . . Csa06g01174 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000284 2 6 3 2 4 4 6 4 4 5 4 4 10 6 3 8 4 2 5 5 5 5 5 3 5 5 5 4 4 6 138
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32311 PF02365 NAM 6.00E-16 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01184 Csa_Chr07 FPKM 2.351145 2.366653 4.938846 5.761293 2.400167 1.889464 2.177701 2.83537 2.099401 1.779886