Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01185 ATGGCATCGTCGGAGATGATGATGATGATGAATGGGAGCTGCAAAAAGGGGAATGGTGCAGCCGCGCCGTGCGCTGCCTGCAAGCTTTTGCGGCGGCGGTGTGCTCACGACTGTGTTTTTGCTCCTTATTTTCCGGCGGATCATCCCCACAAATTCTCCAGTGTTCACAAGGTCTTTGGTGCTAGTAATGTCAGCAAATTGTTGCAGGAGTTACCAGAGCAGCAACGGAGCGATGCAGTGAGTTCGATGGTATATGAGGCAAACGCGAGGATTCGAGATCCGGTGTACGGGTGCGTGGGAGCAATATCATGTCTACAACAGCAAGTGGATGCATTGCAGCAACAATTAGCAATAACACAGGCCCAACTGGTTCAAATGAAAATGGGGCAATTCACAACAACATCACAATCATCATCTAGTACAGATGACCTCCTTCCTCCTCCGCCCAATATCAATGTGGCCGCATCCTCATCCTTATGGTCTTGCTAG 489 49.9 MASSEMMMMMNGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGAISCLQQQVDALQQQLAITQAQLVQMKMGQFTTTSQSSSSTDDLLPPPPNINVAASSSLWSC* 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11638640 11641537 - CsaV3_7G022740.1 Csa07g01185 536748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01185 162 ProSiteProfiles LOB domain profile. 22 123 IPR004883 -
Csa07g01185 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 140 - -
Csa07g01185 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 13 140 - -
Csa07g01185 162 Coils Coil 102 122 - -
Csa07g01185 162 Pfam Lateral organ boundaries (LOB) domain 23 120 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa06g01169 Csa07g01185 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g01185 Csa-Chr7:11638640 Csa06g01395 Csa-Chr6:11927402 4.01E-49 dispersed
Csa06g01169 Csa-Chr6:9817253 Csa07g01185 Csa-Chr7:11638640 1.57E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32312 PF03195 LOB 1.10E-42 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01185 - - csv:101213100 292.352