Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01188 ATGTCCGTACTGATTGTAACCAGTCTTGGGGACATTGTGATCGACCTACACACCGATATCTGCCCCTTGACTTCCAAGAATTTCTTGAAGCTCTGCAAAATTAAGTATTACAATGGGTGTCTGTTTCATACAATACAGAAGGACTTTACTGCTCAGACTGGTGACCCCACTGGCACGGGGACTGGTGGCGACTCAATCTATAAATTTCTCTATGGGGACCAGGCTCGATTTTTCAGCGATGAAATTCGTCTTGATTTAAAGCATTCCAAGACCGGCACTGTTGCAATGGCCAGTGCTGGGGAAAATCTTAATGCTTCTCAGTTTTATTTTACGTTGCGTGATGATCTTGAGTACCTTGATGGCAAGCACACTGTCTTTGGAGAGGTTGCTGAGGGACTAGACACCTTGACTAGGATTAATGAAGCTTATGCAGATGAGAAGGGCAGGCCATACAAAAATATTCGAATCAAACATACTTATATCCTGGATGATCCATTTGATGATCCGCCCCAGTTAGCTGAGCTCATTCCAGATTCTTCTCCTGATGGGAAACCAAAAGATGAGGTTGTTGATGAGGTGCGACTAGAAGATGATTGGGTGCCACTGGATGAGCAATTAGGTGCAGAAGAACTTGAGGAGGTTTTTCGAGCAAAGGAAGCTCACTCCAGAGCTGTCGTGCTTGAAACTATTGGAGATATTCCTGATGCTGAGATAAAGCCTCCTGATAATGTGTTATTTGTTTGTAAACTGAATCCAGTCACAGAAGATGAGGACTTGCATACAATCTTCTCTCGTTTTGGCACTGTATTATCGGCTGAAGTCATCCGTGATTACAAGACTGGAGATAGTTTATGCTATGCCTTCATAGAGTTTGAGACCAAAGAGGCATGTGAACAAGCATATTTTAAGATGGACAATGCTCTGATTGATGATAGAAGGATACATGTGGATTTCAGTCAAAGTGTTGCAAAACTTTGGTCCCAATACCGACGAAAAGATTACACAACAGATAAAGGTGGAGGTTGCTTTAAATGTGGCGCTCTTGACCATATGGCTAGGGATTGCACCGGTGGTTCTACAAAGTTCATCTTGAAGGATGATAATGTACAGCATGGTGGAGATGAATCAAGGTATGACTTTGTTTTCGATGAGGACAATGGAAATAACAATCGGAAAGAAAGGAGACGTCGGGATCATGATCATGATAGGCATGTTGAGAGGCCAAATGCTAGAAAGCCAAGCCCCGCTGGGCGTGAGCGATATGGAGAAAAGAAGGGTGCAAGTGATAGGAATGAATCAAATGACAGAAATAGATTCAGAGAGAGAGAGATGCATCGAGAAAATAAGGACAGACAATCCCGTGGAGACAGAGATGATTTTGAAGATCGAAGGGACCATGAAAGACAAAGAAAGAGACAGAATGACAGAGATGCCCACAAGAAAAAGGAATTGGATTATAGAAAAAGATCTTCAAATGATCATGACGCCTATGGCGACCGGGATTATGAGGCCAATAGAAACAGAAGTGGAAGGGAATATAGTGACAGGTCAGAGAAGAGGAAGGATGGGGAGTTTTATGGCAGAAGGCATGCAGATAAGAGTAGCCATGAAGAGAAAAGGCATGATATTCGAGAATATAGGAAGGATGAACGAGGTTACGGAAAAAGAAGTTTTGACAGTGAAAAAGCTGAGATGAAAGATGGGCCGCATTATAAAAAAAGATATACAGATGATGATGGTTACAAGGACAGGAGAGAAGAGCGAGAACCCAGAAGACGAAGCAGGGAAGAGTACACGGAAAGGTAA 1806 42.8 MSVLIVTSLGDIVIDLHTDICPLTSKNFLKLCKIKYYNGCLFHTIQKDFTAQTGDPTGTGTGGDSIYKFLYGDQARFFSDEIRLDLKHSKTGTVAMASAGENLNASQFYFTLRDDLEYLDGKHTVFGEVAEGLDTLTRINEAYADEKGRPYKNIRIKHTYILDDPFDDPPQLAELIPDSSPDGKPKDEVVDEVRLEDDWVPLDEQLGAEELEEVFRAKEAHSRAVVLETIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVLSAEVIRDYKTGDSLCYAFIEFETKEACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDYTTDKGGGCFKCGALDHMARDCTGGSTKFILKDDNVQHGGDESRYDFVFDEDNGNNNRKERRRRDHDHDRHVERPNARKPSPAGRERYGEKKGASDRNESNDRNRFREREMHRENKDRQSRGDRDDFEDRRDHERQRKRQNDRDAHKKKELDYRKRSSNDHDAYGDRDYEANRNRSGREYSDRSEKRKDGEFYGRRHADKSSHEEKRHDIREYRKDERGYGKRSFDSEKAEMKDGPHYKKRYTDDDGYKDRREEREPRRRSREEYTER* 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11663383 11669923 + CsaV3_7G022770.1 Csa07g01188 536751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01188 601 MobiDBLite consensus disorder prediction 375 601 - -
Csa07g01188 601 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Csa07g01188 601 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 494 IPR035542 -
Csa07g01188 601 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Csa07g01188 601 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Csa07g01188 601 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Csa07g01188 601 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Csa07g01188 601 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Csa07g01188 601 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Csa07g01188 601 SUPERFAMILY RNA-binding domain, RBD 229 331 IPR035979 GO:0003676
Csa07g01188 601 ProSiteProfiles Zinc finger CCHC-type profile. 342 355 IPR001878 GO:0003676|GO:0008270
Csa07g01188 601 Gene3D - 196 325 IPR012677 -
Csa07g01188 601 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Csa07g01188 601 CDD cyclophilin_RRM 4 169 IPR035538 -
Csa07g01188 601 Coils Coil 595 601 - -
Csa07g01188 601 SUPERFAMILY Cyclophilin-like 1 178 IPR029000 -
Csa07g01188 601 Pfam Zinc knuckle 341 356 IPR001878 GO:0003676|GO:0008270
Csa07g01188 601 Gene3D - 1 172 IPR029000 -
Csa07g01188 601 CDD RRM_PPIL4 240 322 - -
Csa07g01188 601 SMART c2hcfinal6 341 357 IPR001878 GO:0003676|GO:0008270
Csa07g01188 601 SMART rrm1_1 244 317 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01586 Csa-Chr3:11767534 Csa07g01188 Csa-Chr7:11663383 3.59E-07 dispersed
Csa07g01188 Csa-Chr7:11663383 Csa06g03023 Csa-Chr6:26036788 2.76E-33 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01188 K12735 - csv:101212221 1144.8