Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01188 ATGTCCGTACTGATTGTAACCAGTCTTGGGGACATTGTGATCGACCTACACACCGATATCTGCCCCTTGACTTCCAAGAATTTCTTGAAGCTCTGCAAAATTAAGTATTACAATGGGTGTCTGTTTCATACAATACAGAAGGACTTTACTGCTCAGACTGGTGACCCCACTGGCACGGGGACTGGTGGCGACTCAATCTATAAATTTCTCTATGGGGACCAGGCTCGATTTTTCAGCGATGAAATTCGTCTTGATTTAAAGCATTCCAAGACCGGCACTGTTGCAATGGCCAGTGCTGGGGAAAATCTTAATGCTTCTCAGTTTTATTTTACGTTGCGTGATGATCTTGAGTACCTTGATGGCAAGCACACTGTCTTTGGAGAGGTTGCTGAGGGACTAGACACCTTGACTAGGATTAATGAAGCTTATGCAGATGAGAAGGGCAGGCCATACAAAAATATTCGAATCAAACATACTTATATCCTGGATGATCCATTTGATGATCCGCCCCAGTTAGCTGAGCTCATTCCAGATTCTTCTCCTGATGGGAAACCAAAAGATGAGGTTGTTGATGAGGTGCGACTAGAAGATGATTGGGTGCCACTGGATGAGCAATTAGGTGCAGAAGAACTTGAGGAGGTTTTTCGAGCAAAGGAAGCTCACTCCAGAGCTGTCGTGCTTGAAACTATTGGAGATATTCCTGATGCTGAGATAAAGCCTCCTGATAATGTGTTATTTGTTTGTAAACTGAATCCAGTCACAGAAGATGAGGACTTGCATACAATCTTCTCTCGTTTTGGCACTGTATTATCGGCTGAAGTCATCCGTGATTACAAGACTGGAGATAGTTTATGCTATGCCTTCATAGAGTTTGAGACCAAAGAGGCATGTGAACAAGCATATTTTAAGATGGACAATGCTCTGATTGATGATAGAAGGATACATGTGGATTTCAGTCAAAGTGTTGCAAAACTTTGGTCCCAATACCGACGAAAAGATTACACAACAGATAAAGGTGGAGGTTGCTTTAAATGTGGCGCTCTTGACCATATGGCTAGGGATTGCACCGGTGGTTCTACAAAGTTCATCTTGAAGGATGATAATGTACAGCATGGTGGAGATGAATCAAGGTATGACTTTGTTTTCGATGAGGACAATGGAAATAACAATCGGAAAGAAAGGAGACGTCGGGATCATGATCATGATAGGCATGTTGAGAGGCCAAATGCTAGAAAGCCAAGCCCCGCTGGGCGTGAGCGATATGGAGAAAAGAAGGGTGCAAGTGATAGGAATGAATCAAATGACAGAAATAGATTCAGAGAGAGAGAGATGCATCGAGAAAATAAGGACAGACAATCCCGTGGAGACAGAGATGATTTTGAAGATCGAAGGGACCATGAAAGACAAAGAAAGAGACAGAATGACAGAGATGCCCACAAGAAAAAGGAATTGGATTATAGAAAAAGATCTTCAAATGATCATGACGCCTATGGCGACCGGGATTATGAGGCCAATAGAAACAGAAGTGGAAGGGAATATAGTGACAGGTCAGAGAAGAGGAAGGATGGGGAGTTTTATGGCAGAAGGCATGCAGATAAGAGTAGCCATGAAGAGAAAAGGCATGATATTCGAGAATATAGGAAGGATGAACGAGGTTACGGAAAAAGAAGTTTTGACAGTGAAAAAGCTGAGATGAAAGATGGGCCGCATTATAAAAAAAGATATACAGATGATGATGGTTACAAGGACAGGAGAGAAGAGCGAGAACCCAGAAGACGAAGCAGGGAAGAGTACACGGAAAGGTAA 1806 42.8 MSVLIVTSLGDIVIDLHTDICPLTSKNFLKLCKIKYYNGCLFHTIQKDFTAQTGDPTGTGTGGDSIYKFLYGDQARFFSDEIRLDLKHSKTGTVAMASAGENLNASQFYFTLRDDLEYLDGKHTVFGEVAEGLDTLTRINEAYADEKGRPYKNIRIKHTYILDDPFDDPPQLAELIPDSSPDGKPKDEVVDEVRLEDDWVPLDEQLGAEELEEVFRAKEAHSRAVVLETIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVLSAEVIRDYKTGDSLCYAFIEFETKEACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDYTTDKGGGCFKCGALDHMARDCTGGSTKFILKDDNVQHGGDESRYDFVFDEDNGNNNRKERRRRDHDHDRHVERPNARKPSPAGRERYGEKKGASDRNESNDRNRFREREMHRENKDRQSRGDRDDFEDRRDHERQRKRQNDRDAHKKKELDYRKRSSNDHDAYGDRDYEANRNRSGREYSDRSEKRKDGEFYGRRHADKSSHEEKRHDIREYRKDERGYGKRSFDSEKAEMKDGPHYKKRYTDDDGYKDRREEREPRRRSREEYTER* 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11663383 11669923 + CsaV3_7G022770.1 Csa07g01188 536751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01188 601 MobiDBLite consensus disorder prediction 375 601 - -
Csa07g01188 601 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Csa07g01188 601 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 494 IPR035542 -
Csa07g01188 601 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Csa07g01188 601 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Csa07g01188 601 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Csa07g01188 601 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Csa07g01188 601 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Csa07g01188 601 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Csa07g01188 601 SUPERFAMILY RNA-binding domain, RBD 229 331 IPR035979 GO:0003676
Csa07g01188 601 ProSiteProfiles Zinc finger CCHC-type profile. 342 355 IPR001878 GO:0003676|GO:0008270
Csa07g01188 601 Gene3D - 196 325 IPR012677 -
Csa07g01188 601 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Csa07g01188 601 CDD cyclophilin_RRM 4 169 IPR035538 -
Csa07g01188 601 Coils Coil 595 601 - -
Csa07g01188 601 SUPERFAMILY Cyclophilin-like 1 178 IPR029000 -
Csa07g01188 601 Pfam Zinc knuckle 341 356 IPR001878 GO:0003676|GO:0008270
Csa07g01188 601 Gene3D - 1 172 IPR029000 -
Csa07g01188 601 CDD RRM_PPIL4 240 322 - -
Csa07g01188 601 SMART c2hcfinal6 341 357 IPR001878 GO:0003676|GO:0008270
Csa07g01188 601 SMART rrm1_1 244 317 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01188 K12735 PPIL4; peptidyl-prolyl cis-trans isomerase-like 4 [EC:5.2.1.8] - csv:101212221 1144.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01586 Csa-Chr3:11767534 Csa07g01188 Csa-Chr7:11663383 3.59E-07 dispersed
Csa07g01188 Csa-Chr7:11663383 Csa06g03023 Csa-Chr6:26036788 2.76E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1086 . . . . . . Bma08g00813 . . . . . . . . Cpe04g00858 . Bhi05g02021 . . . . . . . . . . . . . . . . . . Csa07g01188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00875 Cme01g01530
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009344 0 6 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01188 Csa_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0