Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01190 AGCGTCCCCTTATTGCGTTGGCTATCCCAATCTCTAGAATTTAAGTATCCTCGTAAAACCGAAATATCATTTCCTCCCTCCATAATCCTGTTACAACTTATGGCGTCTTCTTCTTCTTTAGGTTTCATCTTTGTTCTTTGTGCTATTGTTTCCATCGTTAGCCACCTGATTGTTTCGTCTCAAGCTCAGAATTCACCACAACCCATCACCGATCCTGATCAAGCAAGAGCTTTGAATTCCGTATTTAGACAATGGCGAATTTCGGCACCATCAGGGGCATGGAATATAAGCGGCAATCTGTGCAGTGGGAGGGCAGTCGACACTACGACCCCCATCGATACTAATGGAAACCTCAATCCTCTTATAAAATGTGATTGCTCAGCCAACGGCAGTACTACTTGCCTCATTACTCAACTGCACGTTTATGCAATGAATGTTGTTGGTGTACTCCCACCAGAGCTGTGGACATTGACCTCCCTCACATATCTGAAGCTCGATCAAAATTTCTTGACAGGAACACTATCTTCGTCTATTGGTGCTCTCTCAGAATTGCGGACCCTGAGTCTGGGCATTAATGCGTTATCAGGGGAACTTCCCAAGGAACTTGGATCTCTTTCTAAACTGGAACTATTGGCATTTGGGTCCAACAATTTCTCCGGTCCCTTACCGTCAGAACTTGGAAATCTTTCTGTGTTAAGGGAACTATACATTGATAGCTCTGGAGTTTCGGGTGGTATTCCTCCATCATTTTCACGTCTAAGAAACTTGCAGATAGTATGGGCATCGGACAATGAATTCACTGGCAGAATACCTGATTTCATCGGGAACTGGACAAGGCTCACATCTTTGAGGTTTCAAGGAAACTCGTTTACAGGTCCCATACCATCGACATTTTCAAACTTGACATCTTTGACTGAGTTGAGAATAGGTGATTTATCCAATGGGAGCTCTTCTCTGGCATTCATCAGTAAAATGACATCTCTAACTATCCTGGTGCTGAGAAATAATAATATTACTGGTTCAATTCCATCCAACATTGGAGAATTTCGTAGACTTGCCCAGCTGGACTTGAGCTTCAACAACTTGACAGGAGAGATTCCAAGCTCACTTTTCAGTTTGAGCTCACTGTCACACTTGATCCTTGGAAATAATAAGTTAAATGGGACCCTACCTACACAGAAGAGTGTATCACTTCTAAATATAGACTTGTCATATAATGATTTATCAGGGAGCTTTCCTGCTTGGATCGACCAGGAAAACTTACAGCTAAATTTAGTTGCCAACATTTTCACAATTGAAAGTAGCAATAGCAGGGTTTTGCCTTCTGGATTGAATTGTCTTCAACGCAACTTTCCTTGTAATCGAGGCCGTCCATTATATTCTGATTTTGGGATTAAGTGTGGAGGTCCACAGATCAGAAGTTCATCAGGGGTTTTGTTTGAAAGGGAAAATATGGCCCTCGGTCCTGCTACGTACTTTGTCACTGAGTCACAGAGGTGGGCCGTTAGTAATACTGGATACTTTACTGGGACCAGCAATCCTAATTACACAGCCAGTACGATGTCTCAATTCTCGAACACCCTCGAGTCAGAACTTTTTCAGACACAGCGAATATCTGCTTCATCATTGAGATACTATGGACTAGGGCTTGAGAACGGCAACTACACTGTGAACCTTCATTTTGCAGAAATAGCTTTCCCAAATTCAAATACATGGCAAAGCCTTGGGAGGCGTCTCTTTGATATATATATACAGGGAAATCGTGTGTTACAGAATTTTGATATTAGGAAGGAGGCAGGTGGGTCTTTCCTTGCTCTCACAAGGAATTTTACTGCTGAAGTTACAGAAAACTTCCTGGAAATTCATCTCTTTTGGGCGGGAAAAGGCACTTGCTGCATACCCCGTCAGGGTGATTTTGGGCCTGCTGTTTCAGCCATCAGCGCTACCCCAAATTTTGTACCAACTGTCAGTAACGTACCTCCAACTACTAAGGTGACTAGAACAGGCCTAATTGTAGGGCTTGTTGTTGGTTTAGGATCTGTTTTCTTTCTGATTGTCGGTGCAGTATTCTTTGTTGTTCAGAGAAGGAAAAGGCGTCGTGCCTATGAAGATGAAGAGCTCCTAGGAATAGACATTAGACCGTATACTTTTAGTTATTCTGAACTAAGGGATGCTACAAATGACTTTAATTCATCCAACAAACTTGGCGAGGGAGGATTTGGACCTGTTTACAAGGGAACATTAAATGATGGAAGAGTTGTTGCTGTGAAGCAACTTTCAGTGGCATCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATCGCTACAATATCTGCAGTGCAACATCGTAACCTTGTGAAATTATATGGATGTTGCATTGAGGCCGATAAACGTCTCCTTGTTTATGAGTTTCTTGAGAACAAGAGTCTTGACCAATCATTATTTGGGCAAAAACATTTCGTTATTGATTGGCCAACACGGTTTGAGATTTGCGTGGGTGTCGCAAGGGGTCTCACTTACCTTCATGAGGAATCGAGACTTCGCATAGTGCACAGAGATGTTAAGGCGAGTAACATCCTGCTTGATGGTAATCTGATTCCCAAAATTTCAGATTTTGGGTTAGCCAAACTTTATGATGACAAAAAGACTCATATAAGCACCCGTGTTGCTGGTACAATTGGTTATCTTGCACCCGAGTATGCCATGCGTGGCCACCTTACGGAGAAGGCTGATGTCTTCGGATTTGGCGTTGTGGCTCTTGAAATTGTTAGTGGAAGGCCAAATTCAGACCCAAGCTTAGATCAAGATAAAATTTATCTTCTCGAATGGGCATGGTATCTCCACGAAAACAACTGTGAGCTTGAGATGGTGGATTCTGCATTATCGGAGTTCAGGAAGGAGGAAGTAAAAAGGGTGATTGGTGTAGCTCTTCTGTGCACTCAAACATCCCCAGGTCTTCGACCATCGATGTCCCGCGTGGTGGCAATGCTGAGTGGAGACATCGAAGTGGCCACTGTAACTTCCAAACCAGGATACCTGACAGATTGGAAATTTGAGGATATTACAAGCTTTATAGATACTCCATCAACTGAAGAACCTGATACCGGCCGTTATGCATCTACAAGTTCAAGTATTATTGATACGAAGCGCTCGCCAGCCAACCCTTCTGAACCAATGCTTCGTGGATTATTAGGAGAGGGTAGATGA 3207 43.12 SVPLLRWLSQSLEFKYPRKTEISFPPSIILLQLMASSSSLGFIFVLCAIVSIVSHLIVSSQAQNSPQPITDPDQARALNSVFRQWRISAPSGAWNISGNLCSGRAVDTTTPIDTNGNLNPLIKCDCSANGSTTCLITQLHVYAMNVVGVLPPELWTLTSLTYLKLDQNFLTGTLSSSIGALSELRTLSLGINALSGELPKELGSLSKLELLAFGSNNFSGPLPSELGNLSVLRELYIDSSGVSGGIPPSFSRLRNLQIVWASDNEFTGRIPDFIGNWTRLTSLRFQGNSFTGPIPSTFSNLTSLTELRIGDLSNGSSSLAFISKMTSLTILVLRNNNITGSIPSNIGEFRRLAQLDLSFNNLTGEIPSSLFSLSSLSHLILGNNKLNGTLPTQKSVSLLNIDLSYNDLSGSFPAWIDQENLQLNLVANIFTIESSNSRVLPSGLNCLQRNFPCNRGRPLYSDFGIKCGGPQIRSSSGVLFERENMALGPATYFVTESQRWAVSNTGYFTGTSNPNYTASTMSQFSNTLESELFQTQRISASSLRYYGLGLENGNYTVNLHFAEIAFPNSNTWQSLGRRLFDIYIQGNRVLQNFDIRKEAGGSFLALTRNFTAEVTENFLEIHLFWAGKGTCCIPRQGDFGPAVSAISATPNFVPTVSNVPPTTKVTRTGLIVGLVVGLGSVFFLIVGAVFFVVQRRKRRRAYEDEELLGIDIRPYTFSYSELRDATNDFNSSNKLGEGGFGPVYKGTLNDGRVVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQSLFGQKHFVIDWPTRFEICVGVARGLTYLHEESRLRIVHRDVKASNILLDGNLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDPSLDQDKIYLLEWAWYLHENNCELEMVDSALSEFRKEEVKRVIGVALLCTQTSPGLRPSMSRVVAMLSGDIEVATVTSKPGYLTDWKFEDITSFIDTPSTEEPDTGRYASTSSSIIDTKRSPANPSEPMLRGLLGEGR* 1069
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11679101 11689132 - CsaV3_7G022790.1 Csa07g01190 536753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01190 1068 Pfam Leucine rich repeat 327 386 IPR001611 GO:0005515
Csa07g01190 1068 Gene3D Ribonuclease Inhibitor 315 433 IPR032675 -
Csa07g01190 1068 Gene3D Ribonuclease Inhibitor 238 314 IPR032675 -
Csa07g01190 1068 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 173 1047 - -
Csa07g01190 1068 Pfam Protein tyrosine and serine/threonine kinase 732 996 IPR001245 GO:0004672|GO:0006468
Csa07g01190 1068 SUPERFAMILY L domain-like 136 422 - -
Csa07g01190 1068 CDD STKc_IRAK 735 997 - -
Csa07g01190 1068 ProSitePatterns Serine/Threonine protein kinases active-site signature. 849 861 IPR008271 GO:0004672|GO:0006468
Csa07g01190 1068 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 173 1047 - -
Csa07g01190 1068 Gene3D Ribonuclease Inhibitor 93 237 IPR032675 -
Csa07g01190 1068 MobiDBLite consensus disorder prediction 1027 1051 - -
Csa07g01190 1068 ProSiteProfiles Protein kinase domain profile. 729 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01190 1068 SMART serkin_6 729 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01190 1068 Gene3D Phosphorylase Kinase; domain 1 691 804 - -
Csa07g01190 1068 Gene3D - 463 650 - -
Csa07g01190 1068 Pfam Malectin domain 463 646 IPR021720 -
Csa07g01190 1068 MobiDBLite consensus disorder prediction 1027 1068 - -
Csa07g01190 1068 Gene3D Transferase(Phosphotransferase) domain 1 805 1009 - -
Csa07g01190 1068 SUPERFAMILY Protein kinase-like (PK-like) 712 1031 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02203 Csa-Chr1:19103640 Csa07g01190 Csa-Chr7:11679101 5.63E-105 dispersed
Csa05g01091 Csa-Chr5:11066223 Csa07g01190 Csa-Chr7:11679101 0 dispersed
Csa06g02406 Csa-Chr6:21476372 Csa07g01190 Csa-Chr7:11679101 0 dispersed
Csa07g01190 Csa-Chr7:11679101 Csa04g02258 Csa-Chr4:23201564 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78487 PF07714 PK_Tyr_Ser-Thr 2.20E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01190 - - csv:101212465 1989.16