Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01196 ATGGCTGCCGAAGTCAGCAGTCTGATTCGGGTACTCGCCGGGTACAAGGACGATGATAATCGCACAGCCCTCGGTAATGGCCAAGATTCAACGGCTCTCGTTACTCGCGATTTGCTCGGTCAATCTTCCAACCTTACCGACTCTCAAGAATTAGACCTCGACTTGCAAGTTCCCACCGGCTGGGAGAAAAGACTCGACTTGAAGTCAGGAAAAGTTTACATACAGAGGAGTCAAACGCCGGATTCTCCTCTGAATTCAGATTCAAAACAAATCCAAATGATCAATCAAACAGAATCCAAATTCCAGGATTTGAATTTCCCTCCATCTCCTTCAAAACGAACATTAAATCTCTTCAACGAAACCAGTTTGGATTTGAAATTGACATCGTCCCCGTCCTCCACCAATTACGCCAGCGTTTGTACTCTGGATAAGGTGAAATCTGCTCTGGAAAGGGCCGACAAGGAGTTGGTAAAGAAACGCTCTTCCCTATGGAAATCAGCTTCATCCCCGTCGTACTCCTCATCCTCATCTTCCGCGGCGGCGGGAAAGGAAATTCAAGAAGAAGAAGCGGCGGAAATTAGAAACTCGGCGGCGCCGATGGCGGTGGGTTGTCCCGGATGTTTATCGTATGTATTAGTAATGAAAAATAACCCTCGATGTCCTCGTTGCAACTCTGTTGTTCCATTGCCCACCATCAAGAAACCTCGGATTGATCTGAACATGTCCATATAA 732 46.99 MAAEVSSLIRVLAGYKDDDNRTALGNGQDSTALVTRDLLGQSSNLTDSQELDLDLQVPTGWEKRLDLKSGKVYIQRSQTPDSPLNSDSKQIQMINQTESKFQDLNFPPSPSKRTLNLFNETSLDLKLTSSPSSTNYASVCTLDKVKSALERADKELVKKRSSLWKSASSPSYSSSSSSAAAGKEIQEEEAAEIRNSAAPMAVGCPGCLSYVLVMKNNPRCPRCNSVVPLPTIKKPRIDLNMSI* 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11749863 11751828 - CsaV3_7G022850.1 Csa07g01196 536759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01196 243 PANTHER PUTATIVE-RELATED 1 242 - -
Csa07g01196 243 MobiDBLite consensus disorder prediction 166 182 - -
Csa07g01196 243 PANTHER F3O9.30 1 242 - -
Csa07g01196 243 MobiDBLite consensus disorder prediction 166 187 - -
Csa07g01196 243 Coils Coil 142 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01196 - - - csv:101214550 447.203
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa06g01161 Csa07g01196 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g01196 Csa-Chr7:11749863 Csa03g03463 Csa-Chr3:31076160 5.72E-07 dispersed
Csa06g01161 Csa-Chr6:9710134 Csa07g01196 Csa-Chr7:11749863 4.75E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1110 Blo04g00471 . . . Bpe07g00466 . . . . . . . . . Sed05g1845 Cpe04g00860 Cpe16g00715 Bhi05g02012 Tan02g0054 Cmetu01g1126 Lac12g0051 Hepe02g0023 . . Cla02g01820 Cam02g1928 Cec02g1953 Cco02g1994 Clacu02g1908 Cmu02g1856 Cre02g2171 . . . . . Csa07g01196 . Cme11g01622 Blo15g00619 . . . Bpe15g00910 . Bma03g00504 . Sed01g0757 . . . . . . Cpe15g00895 . Bhi10g00954 Tan05g0599 Cmetu11g0762 . Hepe08g0636 . . . . . . . . . . Csa06g01161 Chy11g01030 Cme01g01520
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001739 2 2 2 1 3 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01196 Csa_Chr07 FPKM 3.66862 3.937651 4.852193 5.117676 4.078237 4.48496 4.514291 3.321312 2.553588 2.2116