Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01200 ATGGCCGGAAGCGAAAGGAAATCCAAGGAGAAAAGGAAGCATAGAAAATCGGTTTCATCTTCTGATGACGACAAGAGAAGCAAGAGACCAAGAGCTGCAGAAGATGAGGAAAGGGAAAGCAGAAGGAGTGATAAGAGAGAGAAGCGGAAGGAGAAGAAATCTCACAAGCACTCTAAACGCCACTCAGAGAAGAAGTCGAAGGATCTTCACAAAGGCAAGCATCACAAGGGCGATCACCTTTCAAGAGCCAAAATTCAAGAACTGTCCAAGGAAGACTATTTCTCAAAGAATAATGAGTTTGCTACCTGGTTGAAAGATGTGAAGAATGTGTATTTTTCTGATCTTTCTTCAGAGTCTGCTCGCGAACTTTTCTCAGATTTTGTTGAACTGTGGAATGACAGAAAGCTTGAATCTCGATATTACGAGGGTATTTCAAGTGGGCCTCGGACATCCCATAACTGGAAAATCAAGGGGTGA 477 42.98 MAGSERKSKEKRKHRKSVSSSDDDKRSKRPRAAEDEERESRRSDKREKRKEKKSHKHSKRHSEKKSKDLHKGKHHKGDHLSRAKIQELSKEDYFSKNNEFATWLKDVKNVYFSDLSSESARELFSDFVELWNDRKLESRYYEGISSGPRTSHNWKIKG* 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11795368 11798843 + CsaV3_7G022890.1 Csa07g01200 536763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01200 158 MobiDBLite consensus disorder prediction 15 46 - -
Csa07g01200 158 MobiDBLite consensus disorder prediction 47 79 - -
Csa07g01200 158 PANTHER STYLE CELL-CYCLE INHIBITOR 1 4 156 IPR044688 -
Csa07g01200 158 MobiDBLite consensus disorder prediction 1 84 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01200 - - - csv:101214792 204.142
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1121 Blo04g00469 . . . . . . . . . . . . . Sed04g3511 . . Bhi05g02006 Tan02g0051 Cmetu01g2451 Lac12g0048 . . . . . . . . . . . . . . . Csa07g01200 . . . . . . Bpe15g00912 . Bma03g00502 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00863 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013789 0 2 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 0 0 1 1 1 0 1 1 1 1 1 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01200 Csa_Chr07 FPKM 5.340741 5.380934 6.468669 6.342012 13.274257 14.700784 14.458148 2.16764 2.449104 2.736449