Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01201 ATGGCTTCTCCCTTCCGTTCAGACATATTGAGAGGGAAGGTGGCTTTGATTACTGGAGGCGGCTCTGGAATCGGCTTCGAAATCGCCACCCAATTCGGTCAACATGGAGCTTCCATTGCCATCATGGGTCGAAGGAAGCAAGTCCTCGATTCCGCCGTCGCCGCTCTCCGATCTCTCGGAATCTCGGCATTTGGGTTTGAAGGTGATGTTCGTAAACAAGAAGACGCAAGTAGTGTAGTGGACTCTACTTTCAATAAACTTGGTAGTCTGGACATTCTTGTGAATGCAGCAGCTGGGAACTTTCTGGTATCAGCAGAAGATTTGTCTCCAAATGGATTTCGAACAGTTATGGATATTGATTCAGTTGGCACATTCACAATGTGCCATCAAGCCCTCAAATATCTCAAGAAAGGTGGACCTGGAAGGAATTCACTTACCGGCGGAACAATTATTAATATTAGTGCAACTTTGCACTACACAGCTGCATGGTATCAAATTCATGTATCTGCAGCCAAGGCAGCTGTAGACGCTATTACAAGAAATTTAGCTCTGGAGTGGGGAGCTGATCATGATATTAGGGTAAATGGCATTGCACCTGGACCCATCCAGGGGACTCCTGGTCTGAGTAAACTCGCACCTGAAGAGATAAATAGCAAAATAAGGGAAGATATGCCTTTGTACAGAATAGGAGAAAAATGGGATATTGCTATGGCTGCTCTTTACCTTGCCTCGGATGCAGGTAAATACGTGAATGGAACGACTATCATTGCTGATGGAGGTATGTGGTTGAGCTCACCACGTCGGTTGCCCAAGGATGCTGTTAAGCAGTTGTCACGAGTAGTGGAAAAGAGGTCTAGAAATTTACCTGTTGGTGCTCCAAAAAGCAAGCTGTGA 894 45.86 MASPFRSDILRGKVALITGGGSGIGFEIATQFGQHGASIAIMGRRKQVLDSAVAALRSLGISAFGFEGDVRKQEDASSVVDSTFNKLGSLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHQALKYLKKGGPGRNSLTGGTIINISATLHYTAAWYQIHVSAAKAAVDAITRNLALEWGADHDIRVNGIAPGPIQGTPGLSKLAPEEINSKIREDMPLYRIGEKWDIAMAALYLASDAGKYVNGTTIIADGGMWLSSPRRLPKDAVKQLSRVVEKRSRNLPVGAPKSKL* 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11805491 11813743 + CsaV3_7G022900.1 Csa07g01201 536764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01201 297 PANTHER PEROXISOMAL 2,4-DIENOYL-COA REDUCTASE-LIKE 1 297 - -
Csa07g01201 297 PRINTS Glucose/ribitol dehydrogenase family signature 14 31 IPR002347 -
Csa07g01201 297 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Csa07g01201 297 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Csa07g01201 297 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Csa07g01201 297 PRINTS Glucose/ribitol dehydrogenase family signature 190 207 IPR002347 -
Csa07g01201 297 PRINTS Glucose/ribitol dehydrogenase family signature 225 245 IPR002347 -
Csa07g01201 297 CDD TER_DECR_SDR_a 10 263 - -
Csa07g01201 297 PANTHER PEROXISOMAL 2,4-DIENOYL-COA REDUCTASE 1 297 IPR045017 GO:0008670|GO:0009062
Csa07g01201 297 Gene3D - 2 268 - -
Csa07g01201 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Csa07g01201 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Csa07g01201 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Csa07g01201 297 Pfam Enoyl-(Acyl carrier protein) reductase 22 261 - -
Csa07g01201 297 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 263 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01367 Csa-Chr4:13809469 Csa07g01201 Csa-Chr7:11805491 8.52E-08 dispersed
Csa07g01201 Csa-Chr7:11805491 Csa01g00776 Csa-Chr1:4921987 7.21E-26 dispersed
Csa07g01201 Csa-Chr7:11805491 Csa03g03155 Csa-Chr3:29296482 3.85E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01201 K13237 - csv:101215029 584.719