Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01207 ATGGCCGCAACTTCGCTCTTCAGATCTGCTCCGGCTGCTTCTTTTCCTCAATCATCGCCTTCATTCTCTTCTCCCGACCAATCTACGGCTTCGTGCGTTAGTTTGAATTCTTTGAAGTTTCAATCGAGCATTTTCGGTGCTCAAGTTTCAAGCGGATCATCTTCGTTGCAGCTTCGCAGAAGCCATAATATTCAGCCTATTAAAGCTACAGCCACTGAACTGCCTCCCACAGTTCAAAAATCAAGGAGCGGTGGAAAGACGAAGGTTGGAATCAATGGTTTTGGACGTATTGGAAGGTTGGTATTGCGAATTGCAACCTCGAGGGATGATATTGATGTAGTTGCAGTTAATGATCCGTTTGTTGATGCAAAGTACATGGCATACATGTTCAAGTTTGATTCTACACATGGTAATTTCAAGGGCACAATTAACGTTGTAGATGATTCAACCTTGGAAATCAATGGGAAACAAGTAAAGGTTTTAAGTAAAAGGGATCCGGAAGAAATTCCTTGGGGTGAGTTTGGGGCCGAGTTTGTTGTTGAATCATCTGGGGTTTTCACAACGAAAAATATGGCGTCAGCACACTTGAAGGGTGGAGCTAGGAAAGTAGTCATATCAGCCCCATCAGCTGATGCACCTATGTTCGTTGTTGGAGTTAATGAGACGACATATAAGCCAAGCATGGATATTGTCTCAAATGCAAGTTGTACCACAAATTGCCTTGCTCCTCTTGCGAAGGTGGTTCATGAGGTTTTTGGTATCGCAGAAGGTTTGATGACAACCGTGCATGCAACTACAGCTACTCAAAAAACTGTTGATGGGCCCTCGATGAAGGATTGGCGTGGGGGTCGTGGTGCTGCTCAAAATATCATCCCGAGTTCTACCGGTGCTGCAAAGGCTGTGGGAAAGGTTCTTCCAGAGCTCAACGGGAAACTTACAGGGATGGCATTTCGCGTTCCAACACCCAATGTATCTGTTGTGGACTTGACTTGTAGATTAGAGAAGAGCGCTTCTTATGAAGATGTCAAAGCTACAATCAAATATGCCTCGGAAGGCCCACTCAAGGGTATCCTCGGTTACACGGATGAGGATGTTGTCTCCAATGATTTTGTCGGTGACTCAAGGTCAAGTATATTCGATGCAAAGGCCGGAATAGGTCTCAGCGATTCCTTCATGAAGCTTATCTCTTGGTATGACAACGAGTGGGGATACAGCAACCGAGTACTGGACCTCATAGAGCACATGGCGTTGGTGGCAGCCAACAAGTGA 1269 45.47 MAATSLFRSAPAASFPQSSPSFSSPDQSTASCVSLNSLKFQSSIFGAQVSSGSSSLQLRRSHNIQPIKATATELPPTVQKSRSGGKTKVGINGFGRIGRLVLRIATSRDDIDVVAVNDPFVDAKYMAYMFKFDSTHGNFKGTINVVDDSTLEINGKQVKVLSKRDPEEIPWGEFGAEFVVESSGVFTTKNMASAHLKGGARKVVISAPSADAPMFVVGVNETTYKPSMDIVSNASCTTNCLAPLAKVVHEVFGIAEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKATIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSDSFMKLISWYDNEWGYSNRVLDLIEHMALVAANK* 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11880570 11885604 + CsaV3_7G022960.1 Csa07g01207 536770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01207 422 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 88 189 IPR020828 GO:0051287
Csa07g01207 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 195 208 IPR020831 GO:0016620
Csa07g01207 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 230 248 IPR020831 GO:0016620
Csa07g01207 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 257 273 IPR020831 GO:0016620
Csa07g01207 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 314 331 IPR020831 GO:0016620
Csa07g01207 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 354 369 IPR020831 GO:0016620
Csa07g01207 422 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 234 241 IPR020830 GO:0016620
Csa07g01207 422 Gene3D - 88 415 - -
Csa07g01207 422 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 1 421 - -
Csa07g01207 422 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 241 398 IPR020829 GO:0016620
Csa07g01207 422 SMART gp_dh_n_7 87 236 IPR020828 GO:0051287
Csa07g01207 422 MobiDBLite consensus disorder prediction 1 26 - -
Csa07g01207 422 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 86 252 IPR036291 -
Csa07g01207 422 Gene3D Dihydrodipicolinate Reductase; domain 2 236 402 - -
Csa07g01207 422 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 421 IPR020831 GO:0016620
Csa07g01207 422 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 235 398 - -
Csa07g01207 422 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 88 410 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa06g01151 Csa07g01207 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02722 Csa-Chr4:26248609 Csa07g01207 Csa-Chr7:11880570 5.28E-109 dispersed
Csa06g00121 Csa-Chr6:809676 Csa07g01207 Csa-Chr7:11880570 0 dispersed
Csa06g01151 Csa-Chr6:9595907 Csa07g01207 Csa-Chr7:11880570 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01207 K00134 - csv:101215988 781.171