Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01210 ATGCATAAATTAACTAGAGGACACCGAGATAAACTCCATCAATTTATGGCTATAACTGGTACAAGTGAAAAGGTTGCTCATCAGGCCTTGAAGGCTAGCGATTGGCATCTTGAAGGAGCTTTTGATGTGTTTTATAGTCAACCCCAAATTAAAGCATTCACCGACTCTAGACATTTGGAAGAGCTCTATAACAGATATAAAGACTCATATGTTGATATGATATTGGCTGATGGTATCTCACTGCTCTGCGATGACCTTCAGGTGGATCCTCAAGATATTGTTATGTTGGTTGTTTCTTGGCATATGAAGGCAAACACAATGTGTGAGTTTTCCAAACAGGAGTTTATAGGTGGATTACAAGCACTAGGGATAGATTCTCTGGAGAGGTTCCGAGAAAGGATACCATATATGCGCTCTGAGTTGAAAGATGACCAAAAGTTCCGTGAGATTTACAACTTCGCATTTGGTTGGGCAAAAGAAAAGGGGCAAAAATCTTTAGCATTGGACACTGCAATTGGAATGTGGCAGTTACTATTTGCTGAAAAGCAGTGGCTCCTGGTTGACCACTGGTGTCAGTTCTTGCAGGTAATGTTGCTAAACTGTCTGTTTGAAAATGACCGAACTTCTGTTATGTGTGGGGCAAAGCTTCCTGTTGTTGGGGTATGA 666 41.14 MHKLTRGHRDKLHQFMAITGTSEKVAHQALKASDWHLEGAFDVFYSQPQIKAFTDSRHLEELYNRYKDSYVDMILADGISLLCDDLQVDPQDIVMLVVSWHMKANTMCEFSKQEFIGGLQALGIDSLERFRERIPYMRSELKDDQKFREIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWLLVDHWCQFLQVMLLNCLFENDRTSVMCGAKLPVVGV* 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11904846 11909645 - CsaV3_7G022990.1 Csa07g01210 536773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01210 221 Pfam Cullin binding 131 195 IPR005176 -
Csa07g01210 221 Gene3D Cullin, PONY binding domain 143 208 IPR042460 -
Csa07g01210 221 Gene3D - 5 47 - -
Csa07g01210 221 SUPERFAMILY UBA-like 6 46 IPR009060 GO:0005515
Csa07g01210 221 PANTHER DEFECTIVE IN CULLIN NEDDYLATION PROTEIN 14 197 - -
Csa07g01210 221 ProSiteProfiles DCUN1 domain profile. 54 221 IPR005176 -
Csa07g01210 221 Gene3D - 53 142 - -
Csa07g01210 221 PANTHER RP42 RELATED 14 197 IPR014764 -
Csa07g01210 221 CDD UBA_DCNL 8 48 - -
Csa07g01210 221 Pfam UBA-like domain 10 47 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00200 Csa-Chr4:1169626 Csa07g01210 Csa-Chr7:11904846 4.37E-15 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01210 K17822 - csv:101216476 405.601