Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01213 ATGGTCAAGGCTAAAGTCTGCCTGGATGTGGGCCTGCCTACAGAAGATAATCGCTCCCGTAGGAGTGCACGGGGAGGTTTTAAGGTTTATACGGACAAAGATAAGATTAAAACTGACCCCAGTTGCAAGAAACCTGTAACAATGACAAAGGAGACTTCAACAGATGGTACAATTCAACCGAAGGGAGGCCCGCGACGCTCAGAGAAGAATATAGAGAAATTTGAAATCTCTGGGGCCAAAAGCACGAGAAGAAGAGCACTTGCTGATGTGAGTAATGCCCGAGGCAACTCTACTAGGCAAACACAACAAGATAGCTCCAAGCATAAGGTTTCAACTGGGACTAGAATTAGCACTGCTGGCATCAATATCTTGTTAAGGAAATCTTCGGGAAAAACGAAGAATGCGGGGGAAGCCGTTGGTGACTTGCATGCTTCAGAAAAAGGGCGTGTTAAAGATTCGAAAGGTTCAATCTATGAAAGAAACAAAACAGATGGTCCCTGTTGTGCCAATACTGTGAATGCCAGGAGATCTTTACCAATGCTAAAGAGGATGAACCAGGCAAATGTTTCGAACCCAAAGGAAGTTACTGAGAAGCCCGAAAAGACCAATAAATCTCAAGCATGTTTTACTATATCTGGAAAGAAAGCAACAGTCCAGGCAAAGAATATCAGAAGTCAGCTATGGAATAACCGAGCGAGTGATGGTTTCATTATAACGGGTCAAGCCAAAGTGGACACAAGTGCATTGTTGAAAAAGTCTAGTAAGCCCATTGCAAGGATGAAGAAGGCTTCTGGTACTCAAGAGGCATCAAAACCCAAATGTGCACCAGTTTCAATCAAATCAATTTCTAGTACTGCATCATCATCCAAGATTGTGGAACCTTCAGCGTCTCTTTGTGAGGAAATAACTAATGTGTCCATTCAAGGGAAGGATGCATCTGAACCTACTTGTAATCCAAGTACAAGTACGGATTTCACTGTCAAGAGAAAAGTTGGTCGTAGAAGATCGTATACATCCTTGTTGGTTGCTGGAGCAAAGTTGCTGGATAAATGTGCTGTTGATACAGAAATAGCTAACCTGCCTAGTATTGATAATGACTACGACCAAATGGAGGTTGCTGAATACGTTGAGGAGATATACGATTATTATTGGGTTACAGAGGCTCAAAGTTCATCGCTTTCAAACTACTTATCAGTACAAAAAGAAATTGCCCCCCTTATGCGAGGAATTTTGATCAACTGGTTGATTGAAGTACACTTCAAATTTGACTTGATGCCTGAAACACTATTTCTCTCTGTTACATTGTTTGATCGGTATCTCTCCCTAGTCAAAATCAAGAAGAATGAAATGCAGTTGGTTGGTCTTACTGCATTGTTATTGGCTTCAAAATATGAAGATTTCTGGCATCCTAGGGTTAAAGATCTACTTAGCATTTCAGCTGAGTCCTACTCAAGGGAGCAAATGCTACAAATGGAAGCACTCATTTTGAAGAAGTTGAAGTTTCGCTTGAACGTGCCTACTACATATGTTTTTATGTTAAGATTCCTCAAGGCTGCTCAGTCTGCTAATACTCAGCTTGAACACTTATCATTTTACTTAATTGAGCTGGCTTTGGTTGAATACGAAGCTCTGAGTTTTAGGCCGTCATTGTTATGTGCATCGGCTTTATATGTTGCACGGTGTACGCTGCGAATAAGTCCAAGCTGGACCACTCTACTAAACAAACATACACGCTACGAAACGTCCCAAATAAGAGAATGTGCTGATATGATCTTGAAATTTCACCAATCTGCTCAATTGGGACAGCTGAAAGTCACGCATGAGAAGTACATAAAGCCTAATTTTAAAGGTGTCGCAGCCATAAAGCCACTGGACAAGCTTCCTCTTTGA 1890 41.48 MVKAKVCLDVGLPTEDNRSRRSARGGFKVYTDKDKIKTDPSCKKPVTMTKETSTDGTIQPKGGPRRSEKNIEKFEISGAKSTRRRALADVSNARGNSTRQTQQDSSKHKVSTGTRISTAGINILLRKSSGKTKNAGEAVGDLHASEKGRVKDSKGSIYERNKTDGPCCANTVNARRSLPMLKRMNQANVSNPKEVTEKPEKTNKSQACFTISGKKATVQAKNIRSQLWNNRASDGFIITGQAKVDTSALLKKSSKPIARMKKASGTQEASKPKCAPVSIKSISSTASSSKIVEPSASLCEEITNVSIQGKDASEPTCNPSTSTDFTVKRKVGRRRSYTSLLVAGAKLLDKCAVDTEIANLPSIDNDYDQMEVAEYVEEIYDYYWVTEAQSSSLSNYLSVQKEIAPLMRGILINWLIEVHFKFDLMPETLFLSVTLFDRYLSLVKIKKNEMQLVGLTALLLASKYEDFWHPRVKDLLSISAESYSREQMLQMEALILKKLKFRLNVPTTYVFMLRFLKAAQSANTQLEHLSFYLIELALVEYEALSFRPSLLCASALYVARCTLRISPSWTTLLNKHTRYETSQIRECADMILKFHQSAQLGQLKVTHEKYIKPNFKGVAAIKPLDKLPL* 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11916314 11922233 - CsaV3_7G023020.1 Csa07g01213 536776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01213 629 SUPERFAMILY Cyclin-like 369 504 IPR036915 -
Csa07g01213 629 SMART cyclin_7 510 593 IPR013763 -
Csa07g01213 629 SMART cyclin_7 413 497 IPR013763 -
Csa07g01213 629 MobiDBLite consensus disorder prediction 14 41 - -
Csa07g01213 629 CDD CYCLIN 504 592 IPR013763 -
Csa07g01213 629 ProSitePatterns Cyclins signature. 408 439 IPR006671 -
Csa07g01213 629 MobiDBLite consensus disorder prediction 45 60 - -
Csa07g01213 629 Pfam Cyclin, N-terminal domain 378 504 IPR006671 -
Csa07g01213 629 MobiDBLite consensus disorder prediction 14 113 - -
Csa07g01213 629 MobiDBLite consensus disorder prediction 65 82 - -
Csa07g01213 629 CDD CYCLIN 407 496 IPR013763 -
Csa07g01213 629 Pfam Cyclin, C-terminal domain 506 623 IPR004367 -
Csa07g01213 629 Gene3D - 392 497 - -
Csa07g01213 629 Gene3D - 498 628 - -
Csa07g01213 629 MobiDBLite consensus disorder prediction 91 113 - -
Csa07g01213 629 SUPERFAMILY Cyclin-like 505 626 IPR036915 -
Csa07g01213 629 SMART Cyclin_C_2 506 624 IPR004367 -
Csa07g01213 629 PANTHER CYCLIN-B3-1-RELATED 132 626 - -
Csa07g01213 629 PANTHER CYCLINS 132 626 IPR039361 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02485 Csa-Chr6:22162575 Csa07g01213 Csa-Chr7:11916314 7.67E-81 dispersed
Csa06g03395 Csa-Chr6:28148278 Csa07g01213 Csa-Chr7:11916314 3.49E-72 dispersed
Csa07g01213 Csa-Chr7:11916314 Csa02g02345 Csa-Chr2:20822634 1.82E-50 dispersed
Csa07g01213 Csa-Chr7:11916314 Csa04g02698 Csa-Chr4:26118950 4.65E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01213 K21777 - csv:101213908 1222.61