Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01213 ATGGTCAAGGCTAAAGTCTGCCTGGATGTGGGCCTGCCTACAGAAGATAATCGCTCCCGTAGGAGTGCACGGGGAGGTTTTAAGGTTTATACGGACAAAGATAAGATTAAAACTGACCCCAGTTGCAAGAAACCTGTAACAATGACAAAGGAGACTTCAACAGATGGTACAATTCAACCGAAGGGAGGCCCGCGACGCTCAGAGAAGAATATAGAGAAATTTGAAATCTCTGGGGCCAAAAGCACGAGAAGAAGAGCACTTGCTGATGTGAGTAATGCCCGAGGCAACTCTACTAGGCAAACACAACAAGATAGCTCCAAGCATAAGGTTTCAACTGGGACTAGAATTAGCACTGCTGGCATCAATATCTTGTTAAGGAAATCTTCGGGAAAAACGAAGAATGCGGGGGAAGCCGTTGGTGACTTGCATGCTTCAGAAAAAGGGCGTGTTAAAGATTCGAAAGGTTCAATCTATGAAAGAAACAAAACAGATGGTCCCTGTTGTGCCAATACTGTGAATGCCAGGAGATCTTTACCAATGCTAAAGAGGATGAACCAGGCAAATGTTTCGAACCCAAAGGAAGTTACTGAGAAGCCCGAAAAGACCAATAAATCTCAAGCATGTTTTACTATATCTGGAAAGAAAGCAACAGTCCAGGCAAAGAATATCAGAAGTCAGCTATGGAATAACCGAGCGAGTGATGGTTTCATTATAACGGGTCAAGCCAAAGTGGACACAAGTGCATTGTTGAAAAAGTCTAGTAAGCCCATTGCAAGGATGAAGAAGGCTTCTGGTACTCAAGAGGCATCAAAACCCAAATGTGCACCAGTTTCAATCAAATCAATTTCTAGTACTGCATCATCATCCAAGATTGTGGAACCTTCAGCGTCTCTTTGTGAGGAAATAACTAATGTGTCCATTCAAGGGAAGGATGCATCTGAACCTACTTGTAATCCAAGTACAAGTACGGATTTCACTGTCAAGAGAAAAGTTGGTCGTAGAAGATCGTATACATCCTTGTTGGTTGCTGGAGCAAAGTTGCTGGATAAATGTGCTGTTGATACAGAAATAGCTAACCTGCCTAGTATTGATAATGACTACGACCAAATGGAGGTTGCTGAATACGTTGAGGAGATATACGATTATTATTGGGTTACAGAGGCTCAAAGTTCATCGCTTTCAAACTACTTATCAGTACAAAAAGAAATTGCCCCCCTTATGCGAGGAATTTTGATCAACTGGTTGATTGAAGTACACTTCAAATTTGACTTGATGCCTGAAACACTATTTCTCTCTGTTACATTGTTTGATCGGTATCTCTCCCTAGTCAAAATCAAGAAGAATGAAATGCAGTTGGTTGGTCTTACTGCATTGTTATTGGCTTCAAAATATGAAGATTTCTGGCATCCTAGGGTTAAAGATCTACTTAGCATTTCAGCTGAGTCCTACTCAAGGGAGCAAATGCTACAAATGGAAGCACTCATTTTGAAGAAGTTGAAGTTTCGCTTGAACGTGCCTACTACATATGTTTTTATGTTAAGATTCCTCAAGGCTGCTCAGTCTGCTAATACTCAGCTTGAACACTTATCATTTTACTTAATTGAGCTGGCTTTGGTTGAATACGAAGCTCTGAGTTTTAGGCCGTCATTGTTATGTGCATCGGCTTTATATGTTGCACGGTGTACGCTGCGAATAAGTCCAAGCTGGACCACTCTACTAAACAAACATACACGCTACGAAACGTCCCAAATAAGAGAATGTGCTGATATGATCTTGAAATTTCACCAATCTGCTCAATTGGGACAGCTGAAAGTCACGCATGAGAAGTACATAAAGCCTAATTTTAAAGGTGTCGCAGCCATAAAGCCACTGGACAAGCTTCCTCTTTGA 1890 41.48 MVKAKVCLDVGLPTEDNRSRRSARGGFKVYTDKDKIKTDPSCKKPVTMTKETSTDGTIQPKGGPRRSEKNIEKFEISGAKSTRRRALADVSNARGNSTRQTQQDSSKHKVSTGTRISTAGINILLRKSSGKTKNAGEAVGDLHASEKGRVKDSKGSIYERNKTDGPCCANTVNARRSLPMLKRMNQANVSNPKEVTEKPEKTNKSQACFTISGKKATVQAKNIRSQLWNNRASDGFIITGQAKVDTSALLKKSSKPIARMKKASGTQEASKPKCAPVSIKSISSTASSSKIVEPSASLCEEITNVSIQGKDASEPTCNPSTSTDFTVKRKVGRRRSYTSLLVAGAKLLDKCAVDTEIANLPSIDNDYDQMEVAEYVEEIYDYYWVTEAQSSSLSNYLSVQKEIAPLMRGILINWLIEVHFKFDLMPETLFLSVTLFDRYLSLVKIKKNEMQLVGLTALLLASKYEDFWHPRVKDLLSISAESYSREQMLQMEALILKKLKFRLNVPTTYVFMLRFLKAAQSANTQLEHLSFYLIELALVEYEALSFRPSLLCASALYVARCTLRISPSWTTLLNKHTRYETSQIRECADMILKFHQSAQLGQLKVTHEKYIKPNFKGVAAIKPLDKLPL* 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11916314 11922233 - CsaV3_7G023020.1 Csa07g01213 536776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01213 629 SUPERFAMILY Cyclin-like 369 504 IPR036915 -
Csa07g01213 629 SMART cyclin_7 510 593 IPR013763 -
Csa07g01213 629 SMART cyclin_7 413 497 IPR013763 -
Csa07g01213 629 MobiDBLite consensus disorder prediction 14 41 - -
Csa07g01213 629 CDD CYCLIN 504 592 IPR013763 -
Csa07g01213 629 ProSitePatterns Cyclins signature. 408 439 IPR006671 -
Csa07g01213 629 MobiDBLite consensus disorder prediction 45 60 - -
Csa07g01213 629 Pfam Cyclin, N-terminal domain 378 504 IPR006671 -
Csa07g01213 629 MobiDBLite consensus disorder prediction 14 113 - -
Csa07g01213 629 MobiDBLite consensus disorder prediction 65 82 - -
Csa07g01213 629 CDD CYCLIN 407 496 IPR013763 -
Csa07g01213 629 Pfam Cyclin, C-terminal domain 506 623 IPR004367 -
Csa07g01213 629 Gene3D - 392 497 - -
Csa07g01213 629 Gene3D - 498 628 - -
Csa07g01213 629 MobiDBLite consensus disorder prediction 91 113 - -
Csa07g01213 629 SUPERFAMILY Cyclin-like 505 626 IPR036915 -
Csa07g01213 629 SMART Cyclin_C_2 506 624 IPR004367 -
Csa07g01213 629 PANTHER CYCLIN-B3-1-RELATED 132 626 - -
Csa07g01213 629 PANTHER CYCLINS 132 626 IPR039361 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01213 K21777 CCNB; G2/mitotic-specific cyclin-B, other - csv:101213908 1222.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02485 Csa-Chr6:22162575 Csa07g01213 Csa-Chr7:11916314 7.67E-81 dispersed
Csa06g03395 Csa-Chr6:28148278 Csa07g01213 Csa-Chr7:11916314 3.49E-72 dispersed
Csa07g01213 Csa-Chr7:11916314 Csa02g02345 Csa-Chr2:20822634 1.82E-50 dispersed
Csa07g01213 Csa-Chr7:11916314 Csa04g02698 Csa-Chr4:26118950 4.65E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1155 Blo04g00460 . . . . . . . . . . . . . Sed04g3556 . . Bhi05g01991 Tan02g0023 Cmetu01g1284 . Hepe02g0012 . . . . . . . . . . . . . . Csa07g01213 . . . . . . Bpe15g00922 . Bma03g00492 . . . . . . . . Cpe15g00905 . . . . . . . . . . . . . . . . . Chy01g00850 Cme01g01500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012027 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01213 Csa_Chr07 FPKM 5.864672 6.331284 0.0 6.732463 7.239961 3.828234 6.918821 5.076593 4.872632 6.076807