Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01214 ATGTCTAAATTCTTCTTTCTTTTTCTTACCCTCTTCCTCCCTGCTTTAGTCTCCGGCGTGGGGGCGTCATGTAGCTGTGATAAATCCGATGGGGGTGGTGCCGTCGCCACAAAAGAAGCAATGAAATACAAGGTGGGTTCTATTGGGTCGGTGCTGGTGGCTGGTGCTGCAGGGGTGAGCCTTCCTTTGGTGGGGAAGAAGATTCGGTGTCTGAGGCCAGAAAATGACATATTTTTCATGATAAAGGCTTTTGCTGCAGGGGTCATTTTGAGCACTGGGTTCATCCACATACTGCCCGATGCCTTTCAAGACTTGACCTCCCCCTGTCTGGGCCAAAATCCTTGGGGAGATTTCCCATTTGCGGGTTTCATCGCAATGGCCGCCTCCATCGCCACCTTGATGGTGGACACATTTGCAACCAGTTTTTACCAGAGACGCCACTTCAGTAAAACCAAGCAGGTAATTGCTGACCAGGAAACAGGCAATGACCATGCCGGCCACGTGCATGTTCACACTCACGCCACACATGGCCACGCTCATGGATCCGCCCCTACTCCCACCGGAGAATTGAGCCTCGCTGACTTGATCCGCTACCGGATTATATCTCAGGTGTTGGAATTGGGAATTGTGGTTCATTCGGTGATAATTGGTATTTCTCTTGGTGCATCGGTGAGCCCTGCCACCATTAAGCCACTGCTGGTAGCTCTGTCTTTCCACCAATTTTTTGAGGGCATGGGACTCGGTGGCTGCATTTCCCAGGCACAATTTAGGTGGCGATCGGCGGCAGCAATGGCGACATTTTTCTCACTGACAGCGCCTGTGGGAATTGCTGTGGGAATCGGAATCTCAGGAGCTTATAGAGACAACAGCCGGACGGCTCTGATCGTTGAAGGAAGCATGAACTCAGCATCCGCAGGGATATTGATTTACATGGCTCTTGTCGACCTTCTTGCTGCTGATTTCATGAACCCAAGGATGCAAAACAATTTGGGTCTTCAATTAGGAGCTAATATCTCTTTGCTTCTAGGAGCTGCTTGCATGTCTGTGTTGGCCAAATGGGCTTAG 1065 50.52 MSKFFFLFLTLFLPALVSGVGASCSCDKSDGGGAVATKEAMKYKVGSIGSVLVAGAAGVSLPLVGKKIRCLRPENDIFFMIKAFAAGVILSTGFIHILPDAFQDLTSPCLGQNPWGDFPFAGFIAMAASIATLMVDTFATSFYQRRHFSKTKQVIADQETGNDHAGHVHVHTHATHGHAHGSAPTPTGELSLADLIRYRIISQVLELGIVVHSVIIGISLGASVSPATIKPLLVALSFHQFFEGMGLGGCISQAQFRWRSAAAMATFFSLTAPVGIAVGIGISGAYRDNSRTALIVEGSMNSASAGILIYMALVDLLAADFMNPRMQNNLGLQLGANISLLLGAACMSVLAKWA* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11924273 11928348 + CsaV3_7G023030.1 Csa07g01214 536777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01214 354 PANTHER METAL TRANSPORT PROTEIN 9 354 - -
Csa07g01214 354 TIGRFAM zip: ZIP zinc/iron transport family 29 354 IPR004698 GO:0005385|GO:0016021|GO:0071577
Csa07g01214 354 PANTHER ZINC/IRON TRANSPORTER 9 354 - -
Csa07g01214 354 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Csa07g01214 354 Pfam ZIP Zinc transporter 43 351 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02214 Csa-Chr4:22908363 Csa07g01214 Csa-Chr7:11924273 1.88E-123 dispersed
Csa06g03640 Csa-Chr6:29322423 Csa07g01214 Csa-Chr7:11924273 1.95E-103 dispersed
Csa07g00940 Csa-Chr7:8188845 Csa07g01214 Csa-Chr7:11924273 5.52E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01214 K14709 - csv:101216720 641.343