Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01215 ATGGATCTTACCAGACTCTGCCTTCTTCTTTTCTTTATATCCACTTGTGCAACCCATTTCTTCCCTCAATGTGATGGTAGGAGTGTTCATAGAAAGTCAAAGAAACTCCAACTGGCGAAATACTTAGATGTAATTGGTCGAAAGGTGAGCCACGTGGATGGAGCGACGAATTCCCAGCCTTACGTGAGCTCACCATTCACTCTACCGCCATTCGATTCACTGCCGGACAACGCGCCACCTTACTGCTCCTATCCCCCAATTACTCCTCAGCCTCCTTCTTCGCCCTTCACCTACATTTCATCGCCGCCGCCACCTTTTTATTATCTCCCACCTCCTACCCCAACCTACGGCTTTCCTCCGTCTCCACCCAGCCTCACCCCACCTTACTATTACGAGCCCAGCCCTCCAAGCTACGTTCCGAGCCGGCCACCCTCTCCGACGGTGTTCGTGCCGAGCCCACCCGTGTTCCAACCACCAGTGATTTACCCTCCACCGAGCGTACCACCACCTCCCCACTCCGCACCTAATATAGCCCTGTGGTGCGTGGCCAAGCCCTCTGTGCCGGACCCAATCATTCAAGAGGCCATGAACTATGCCTGCGGGACGGTGGCGGATTGCGATTCTATTCTCCCTAGCGGACCCTGTTTTATGCCCAACACGCTCATAGCCCACGCTTCCTACGCCTTCAATAGTTATTGGCAGCGAACCAAGGTGGGCGGTGGCACTTGCGAATTTGGTGGTACTGCCATGCTTGTCACCGTCGATCCTAGTTATGATGGGTGCCATTTCACATACACGTAG 801 53.93 MDLTRLCLLLFFISTCATHFFPQCDGRSVHRKSKKLQLAKYLDVIGRKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPPITPQPPSSPFTYISSPPPPFYYLPPPTPTYGFPPSPPSLTPPYYYEPSPPSYVPSRPPSPTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVADCDSILPSGPCFMPNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTVDPSYDGCHFTYT* 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11934271 11937448 + CsaV3_7G023040.1 Csa07g01215 536778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01215 266 PRINTS Proline rich extensin signature 58 70 - -
Csa07g01215 266 PRINTS Proline rich extensin signature 84 105 - -
Csa07g01215 266 PRINTS Proline rich extensin signature 112 128 - -
Csa07g01215 266 PRINTS Proline rich extensin signature 132 149 - -
Csa07g01215 266 PRINTS Proline rich extensin signature 154 179 - -
Csa07g01215 266 Gene3D - 174 263 - -
Csa07g01215 266 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEIN 6 75 - -
Csa07g01215 266 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEIN 114 265 - -
Csa07g01215 266 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 75 IPR044965 GO:0004553|GO:0005975
Csa07g01215 266 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 114 265 IPR044965 GO:0004553|GO:0005975
Csa07g01215 266 Pfam X8 domain 179 250 IPR012946 -
Csa07g01215 266 SMART X8_cls 179 263 IPR012946 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01215 - - - csv:101214150 218.779
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g01215 Csa-Chr7:11934271 Csa01g03251 Csa-Chr1:28683643 1.31E-23 dispersed
Csa07g01215 Csa-Chr7:11934271 Csa01g00594 Csa-Chr1:3825546 1.94E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1163 . . . . Bpe07g00474 . . . . . . . . . . . . Bhi05g01989 . . Lac12g0036 Hepe02g0010 . . . . . . . . . . . . . . Csa07g01215 . . . . . . . . . Bma12g00577 . . . . . . . Cpe15g00907 . . . . . . . . . . . . . . . . . Chy01g00848 Cme01g01498
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007417 1 1 1 3 1 1 1 1 1 1 1 1 0 1 1 1 1 3 1 1 1 1 1 1 0 1 1 3 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01215 Csa_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0