Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01215 ATGGATCTTACCAGACTCTGCCTTCTTCTTTTCTTTATATCCACTTGTGCAACCCATTTCTTCCCTCAATGTGATGGTAGGAGTGTTCATAGAAAGTCAAAGAAACTCCAACTGGCGAAATACTTAGATGTAATTGGTCGAAAGGTGAGCCACGTGGATGGAGCGACGAATTCCCAGCCTTACGTGAGCTCACCATTCACTCTACCGCCATTCGATTCACTGCCGGACAACGCGCCACCTTACTGCTCCTATCCCCCAATTACTCCTCAGCCTCCTTCTTCGCCCTTCACCTACATTTCATCGCCGCCGCCACCTTTTTATTATCTCCCACCTCCTACCCCAACCTACGGCTTTCCTCCGTCTCCACCCAGCCTCACCCCACCTTACTATTACGAGCCCAGCCCTCCAAGCTACGTTCCGAGCCGGCCACCCTCTCCGACGGTGTTCGTGCCGAGCCCACCCGTGTTCCAACCACCAGTGATTTACCCTCCACCGAGCGTACCACCACCTCCCCACTCCGCACCTAATATAGCCCTGTGGTGCGTGGCCAAGCCCTCTGTGCCGGACCCAATCATTCAAGAGGCCATGAACTATGCCTGCGGGACGGTGGCGGATTGCGATTCTATTCTCCCTAGCGGACCCTGTTTTATGCCCAACACGCTCATAGCCCACGCTTCCTACGCCTTCAATAGTTATTGGCAGCGAACCAAGGTGGGCGGTGGCACTTGCGAATTTGGTGGTACTGCCATGCTTGTCACCGTCGATCCTAGTTATGATGGGTGCCATTTCACATACACGTAG 801 53.93 MDLTRLCLLLFFISTCATHFFPQCDGRSVHRKSKKLQLAKYLDVIGRKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPPITPQPPSSPFTYISSPPPPFYYLPPPTPTYGFPPSPPSLTPPYYYEPSPPSYVPSRPPSPTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVADCDSILPSGPCFMPNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTVDPSYDGCHFTYT* 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11934271 11937448 + CsaV3_7G023040.1 Csa07g01215 536778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01215 266 PRINTS Proline rich extensin signature 58 70 - -
Csa07g01215 266 PRINTS Proline rich extensin signature 84 105 - -
Csa07g01215 266 PRINTS Proline rich extensin signature 112 128 - -
Csa07g01215 266 PRINTS Proline rich extensin signature 132 149 - -
Csa07g01215 266 PRINTS Proline rich extensin signature 154 179 - -
Csa07g01215 266 Gene3D - 174 263 - -
Csa07g01215 266 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEIN 6 75 - -
Csa07g01215 266 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEIN 114 265 - -
Csa07g01215 266 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 75 IPR044965 GO:0004553|GO:0005975
Csa07g01215 266 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 114 265 IPR044965 GO:0004553|GO:0005975
Csa07g01215 266 Pfam X8 domain 179 250 IPR012946 -
Csa07g01215 266 SMART X8_cls 179 263 IPR012946 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g01215 Csa-Chr7:11934271 Csa01g03251 Csa-Chr1:28683643 1.31E-23 dispersed
Csa07g01215 Csa-Chr7:11934271 Csa01g00594 Csa-Chr1:3825546 1.94E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01215 - - csv:101214150 218.779