Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01216 ATGGCCATGGAGGACGGCTTTGCAGCTGAAAAGCTCTTCAATCAGGGATTTTCCTACACCTACGACGATGTCATCTTCCTTCCTCACTACATTGACTTCCCCACTGACTCTGTCCAACTTGCTACCCGACTCACCCGCAATATCTCTCTCTCCATTCCATGCGTTTCTTCCCCCATGGACACCGTCACCGAAGCCTACATGGCTTCTGCCATGGCTTCTCTTGGCGGCATCGGTATCATCCACTCCAATTCCCCTGCCTCCCAACAAGCTGCCATGGTTCATGCCGCCAAGGCCCGCCGAGTTCCTATTTTGTCCAATCTTGTTTTCAAGTCCCCATCCGATCGGATTGACTCCGATGACGATTTTGCTTCTTCGCCTTTCATTTTAGTTACTGAGTCAGGTACCTCTAAGTCCAAGCTTTTGGGCTATGTCTCGTACGCGGATTGGACTTCCCAGGGGAACAAGGAAGTAAAAATATATGATTATATGGTTAATTCGGGGGCTTCAGTTCCGTGGAACTATGATTTAGGGCAATTGGACGCGTTTTTGGAGGAAAACAAGAAGGACTTTGTGCCGCTGTTAAAGGACGGCGAAGTTGTGGATGTTGCGACAAAGTCGGAAGTAGAGAGAATCAAAAGTTATCCAAAACTGGGTGTTGGGTCGGTTGCGGCCGATGGTTCCTGGCTGGTGGGGGCTTCGATTGGAACAAGGGAACATGACAAGGAAAGGCTCAAGCTTTTAGTGCAGGCAGGTATAAACGTAGTGGTGTTGGATAGTTCACAGGGTAACTCCAGTTATCAGATTGATATGATAAAGTATGTGAAGCGGACATATCCAGAGTTGGACGTGATTGGGGGAAATGTGGTGACGATGGCACAAGCCCAGAATTTGATTCAAGCTGGAGTCGATGGCTTGCGGATTGGGATGGGTTCTGGATCTATCTGTACTACTCAGGAGGTTTGTGCGGTTGGACGAGGACAGGCGACCGCGGTTTACAAGGTCTCTTTAGTTGCTTCGCACAGTGGCGTGCCAGTTATCGCTGATGGTGGAATTTCAAACTCTGGGCATATTGTTAAGGCTTTAGTTCTTGGGGCATCCACGGTAATGATGGGAAGTTTCTTGGCTGGAAGCACCGAGGCCCCTGGGGCCTTCGAAACGAGGAATGGTCAGCGTGTAAAGAAATATCGGGGGATGGGATCTTTAGAAGCAATGATCAAAGGAAGTGATGCCAGGTACTTGGGGGATACTGCAACCCTTAAGATAGCTCAGGGGGTTGTTGGAGCAGTTGCGGATAAGGGTTCAGTTTTGAAGTTCATACCCTATACCATGCAAGCAGTCAAGCAAGGGTTCCAAGATCTTGGTGCTTCTTCCGTCAAATCTGCCCATGACCTCTTAAGCTCAAAGGTTTTAAGGCTAGAGGTCCGTTCAGGGGCGGCACAGGTTGAAGGTGGAATTCATGGATTGGTCTCTTATGAAAAGAGATCTTTTTAG 1491 48.83 MAMEDGFAAEKLFNQGFSYTYDDVIFLPHYIDFPTDSVQLATRLTRNISLSIPCVSSPMDTVTEAYMASAMASLGGIGIIHSNSPASQQAAMVHAAKARRVPILSNLVFKSPSDRIDSDDDFASSPFILVTESGTSKSKLLGYVSYADWTSQGNKEVKIYDYMVNSGASVPWNYDLGQLDAFLEENKKDFVPLLKDGEVVDVATKSEVERIKSYPKLGVGSVAADGSWLVGASIGTREHDKERLKLLVQAGINVVVLDSSQGNSSYQIDMIKYVKRTYPELDVIGGNVVTMAQAQNLIQAGVDGLRIGMGSGSICTTQEVCAVGRGQATAVYKVSLVASHSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAFETRNGQRVKKYRGMGSLEAMIKGSDARYLGDTATLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSVKSAHDLLSSKVLRLEVRSGAAQVEGGIHGLVSYEKRSF* 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11938379 11940788 + CsaV3_7G023050.1 Csa07g01216 536779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01216 496 Hamap Inosine-5'-monophosphate dehydrogenase [guaB]. 18 494 IPR005990 GO:0003938|GO:0006164
Csa07g01216 496 CDD IMPDH 18 463 IPR001093 GO:0003824
Csa07g01216 496 SUPERFAMILY CBS-domain pair 128 209 IPR046342 -
Csa07g01216 496 PIRSF IMPDH 6 496 IPR005990 GO:0003938|GO:0006164
Csa07g01216 496 PANTHER INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE 1 3 496 - -
Csa07g01216 496 SMART IMPDH_2 17 486 - -
Csa07g01216 496 SUPERFAMILY Inosine monophosphate dehydrogenase (IMPDH) 9 495 - -
Csa07g01216 496 TIGRFAM IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 18 462 IPR005990 GO:0003938|GO:0006164
Csa07g01216 496 ProSitePatterns IMP dehydrogenase / GMP reductase signature. 305 317 IPR015875 GO:0016491
Csa07g01216 496 Gene3D Aldolase class I 6 496 IPR013785 -
Csa07g01216 496 PANTHER INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED 3 496 IPR005990 GO:0003938|GO:0006164
Csa07g01216 496 Pfam IMP dehydrogenase / GMP reductase domain 19 486 IPR001093 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01216 K00088 IMPDH, guaB; IMP dehydrogenase [EC:1.1.1.205] - csv:101217193 964.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03124 Csa-Chr3:29139248 Csa07g01216 Csa-Chr7:11938379 7.22E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1164 . Blo13g00604 . . . . Bma08g00823 . . . . . . . Sed04g3557 . . Bhi05g01988 Tan02g0021 Cmetu01g0138 Lac12g0035 Hepe02g0009 . . . . . . . . . . . . . . Csa07g01216 . . . . . . . . . . . . . . . . . Cpe15g00908 . . . . . . . . . . . . . . . . . Chy01g00847 Cme01g01496
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007875 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01216 Csa_Chr07 FPKM 31.790575 28.329134 23.264004 24.58976 26.807875 23.165485 27.913494 31.89645 32.484867 37.246746