Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01217 ATGGTCCCTTCTCCAAACTCTCTTAATAAACCTCTTTTTCCTGAGTGCATAAACTGGGTATTAGATCATCAAAACCCTGATGGGTCATGGGGCATACTCCATGACCATCAGTTGGTGATGAAAGCCACTCTCTTATCCACATTAGCATGTGTTCTTACTCTTAAGCGATGGGATATCGGTGATGATCATATGAGCAAGGCCCTTAGTTTTATCAAGTCTAATATAGCTTCAGCTACTGATGAGAATCAACGTTCTCCTGTGGGATTTGACATAATTTTCCCTGGTATGATTGAGTATGCTAAAGACTTGAATTTGAATCTACCCTTGGCATCAATGAATGTGGATGCTTTGGTTCAAAAGAAAGAGTTGGAGCTTAGAAGCTGCTGTAGCAACTCTGAAGGAGGAAAAGCCTATTTAGCGTATGTTTCAGAAGGAATTGGAAAATTACAGGACTGGGAAATGGTCATGCGATATCAAAGGAAGAACGGATCACTGTTTAGTTCTCCATCCACCACGGCAGTGGCTTTTATGCACAGAAATGATGATGGCTGTTTTAATTACCTTCGCTCAGTCTTACAAAAGTTTCATAGTTCAGTTCCCGCAATATATCCTCTTGATATATATGCTCGTTTACACATGGTTGATAGCCTTCAAAAACTGGGGATTGATGGCCATTTCAAAGATGAGATTAGAAGTGTATTAGATGAAACATACAGCTGTTGGATGCAAGGGGAGGAAAACATATTCCTAGATGCTTCAACTTGTGCAATGGCCTTCCGGATGTTACGTGTTGAAGGATATGATGTTTCTTCAGATCAATTGACTCAATTCTCAGAAGGTCTCTTTTCAAATTGCCTCGGAGGACATTTAAAAGACTTTAGTGCCTCACTAGAGTTATTTAAGGCCTCCCAGATTATCATTTATCCGGATGAGTTTATTCTGGAAAATATAAACTCTTGGACTAGTCGTTTCCTGAATCATGGATTATCTAGTGGTTCAGTTCATTCTGATAGAACTGAGAGACTCGTGAAACAAGAGGCAGTTAATGCTTTCGAGTTCCCCTATAATTCAACTCTGGAACGCTTATCAAATAAGCGAGCACTGGAAAGTTACAGTGGAGACATTGTGAGGATTTCAAAAACAGCATATGCCTGCTTAAATTTTGGTCATCAAGATTTCTTGGAACTTGCTGTAGAAGATTTCAATACCCTGCAAGGCATACATCGCAAGGAACTGAAAGAGCTTGAAAAATGGGTCATCGAAAACAAATTGGACAAGTTGAAATTTGCGAGACAGAAGTTAGCGTACTGCTATTTTTCTGCTGCAGCGACCCTAACCTCTCCAGAACTTTGTGATGCCCGCTTATCATGGGCAAAAAATGGGGTACTCACAACCGTGGTTGATGATTTCTTTGATGTTGGAGGATCTGAAGAGGAATTGGTGGGATGCCAGTGGGGAAACGGGTTACTGTTCCAAGGAGGTTGA 1485 40.74 MVPSPNSLNKPLFPECINWVLDHQNPDGSWGILHDHQLVMKATLLSTLACVLTLKRWDIGDDHMSKALSFIKSNIASATDENQRSPVGFDIIFPGMIEYAKDLNLNLPLASMNVDALVQKKELELRSCCSNSEGGKAYLAYVSEGIGKLQDWEMVMRYQRKNGSLFSSPSTTAVAFMHRNDDGCFNYLRSVLQKFHSSVPAIYPLDIYARLHMVDSLQKLGIDGHFKDEIRSVLDETYSCWMQGEENIFLDASTCAMAFRMLRVEGYDVSSDQLTQFSEGLFSNCLGGHLKDFSASLELFKASQIIIYPDEFILENINSWTSRFLNHGLSSGSVHSDRTERLVKQEAVNAFEFPYNSTLERLSNKRALESYSGDIVRISKTAYACLNFGHQDFLELAVEDFNTLQGIHRKELKELEKWVIENKLDKLKFARQKLAYCYFSAAATLTSPELCDARLSWAKNGVLTTVVDDFFDVGGSEEELVGCQWGNGLLFQGG* 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11941684 11947918 - CsaV3_7G023060.1 Csa07g01217 536780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01217 494 PANTHER ENT-KAUR-16-ENE SYNTHASE, CHLOROPLASTIC 1 480 - -
Csa07g01217 494 Pfam Terpene synthase family, metal binding domain 394 480 IPR005630 GO:0000287|GO:0010333|GO:0016829
Csa07g01217 494 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 1 480 - -
Csa07g01217 494 Gene3D - 1 192 - -
Csa07g01217 494 Pfam Terpene synthase, N-terminal domain 151 343 IPR001906 GO:0010333|GO:0016829
Csa07g01217 494 SFLD Terpene Cyclase Like 1 N-term 9 384 - -
Csa07g01217 494 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 7 177 IPR008930 -
Csa07g01217 494 Gene3D Farnesyl Diphosphate Synthase 405 484 IPR008949 -
Csa07g01217 494 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 161 373 IPR008930 -
Csa07g01217 494 Gene3D - 193 401 IPR036965 GO:0010333|GO:0016829
Csa07g01217 494 SUPERFAMILY Terpenoid synthases 391 481 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01217 K04121 E4.2.3.19; ent-kaurene synthase [EC:4.2.3.19] - csv:101217426 964.526
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02337 Csa-Chr6:20947201 Csa07g01217 Csa-Chr7:11941684 8.24E-80 dispersed
Csa07g01217 Csa-Chr7:11941684 Csa02g02738 Csa-Chr2:23860891 5.49E-24 dispersed
Csa07g01217 Csa-Chr7:11941684 Csa03g00574 Csa-Chr3:4925550 4.67E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1165 Blo04g00457 . . . . . Bma08g00824 . . . . . . . . . . Bhi05g01987 . . . . . . . . . . . . . . . . . . Csa07g01217 . . . . . . Bpe15g00924 . Bma03g00490 . . . . . . . . Cpe15g00909 . . . . . . . . . . . . . . . . . Chy01g00846 Cme01g01495
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003981 2 5 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 2 2 1 1 1 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01217 Csa_Chr07 FPKM 1.54957 1.492373 1.47273 2.16167 4.425293 4.475311 4.284354 9.662311 10.109772 9.235255