Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01217 ATGGTCCCTTCTCCAAACTCTCTTAATAAACCTCTTTTTCCTGAGTGCATAAACTGGGTATTAGATCATCAAAACCCTGATGGGTCATGGGGCATACTCCATGACCATCAGTTGGTGATGAAAGCCACTCTCTTATCCACATTAGCATGTGTTCTTACTCTTAAGCGATGGGATATCGGTGATGATCATATGAGCAAGGCCCTTAGTTTTATCAAGTCTAATATAGCTTCAGCTACTGATGAGAATCAACGTTCTCCTGTGGGATTTGACATAATTTTCCCTGGTATGATTGAGTATGCTAAAGACTTGAATTTGAATCTACCCTTGGCATCAATGAATGTGGATGCTTTGGTTCAAAAGAAAGAGTTGGAGCTTAGAAGCTGCTGTAGCAACTCTGAAGGAGGAAAAGCCTATTTAGCGTATGTTTCAGAAGGAATTGGAAAATTACAGGACTGGGAAATGGTCATGCGATATCAAAGGAAGAACGGATCACTGTTTAGTTCTCCATCCACCACGGCAGTGGCTTTTATGCACAGAAATGATGATGGCTGTTTTAATTACCTTCGCTCAGTCTTACAAAAGTTTCATAGTTCAGTTCCCGCAATATATCCTCTTGATATATATGCTCGTTTACACATGGTTGATAGCCTTCAAAAACTGGGGATTGATGGCCATTTCAAAGATGAGATTAGAAGTGTATTAGATGAAACATACAGCTGTTGGATGCAAGGGGAGGAAAACATATTCCTAGATGCTTCAACTTGTGCAATGGCCTTCCGGATGTTACGTGTTGAAGGATATGATGTTTCTTCAGATCAATTGACTCAATTCTCAGAAGGTCTCTTTTCAAATTGCCTCGGAGGACATTTAAAAGACTTTAGTGCCTCACTAGAGTTATTTAAGGCCTCCCAGATTATCATTTATCCGGATGAGTTTATTCTGGAAAATATAAACTCTTGGACTAGTCGTTTCCTGAATCATGGATTATCTAGTGGTTCAGTTCATTCTGATAGAACTGAGAGACTCGTGAAACAAGAGGCAGTTAATGCTTTCGAGTTCCCCTATAATTCAACTCTGGAACGCTTATCAAATAAGCGAGCACTGGAAAGTTACAGTGGAGACATTGTGAGGATTTCAAAAACAGCATATGCCTGCTTAAATTTTGGTCATCAAGATTTCTTGGAACTTGCTGTAGAAGATTTCAATACCCTGCAAGGCATACATCGCAAGGAACTGAAAGAGCTTGAAAAATGGGTCATCGAAAACAAATTGGACAAGTTGAAATTTGCGAGACAGAAGTTAGCGTACTGCTATTTTTCTGCTGCAGCGACCCTAACCTCTCCAGAACTTTGTGATGCCCGCTTATCATGGGCAAAAAATGGGGTACTCACAACCGTGGTTGATGATTTCTTTGATGTTGGAGGATCTGAAGAGGAATTGGTGGGATGCCAGTGGGGAAACGGGTTACTGTTCCAAGGAGGTTGA 1485 40.74 MVPSPNSLNKPLFPECINWVLDHQNPDGSWGILHDHQLVMKATLLSTLACVLTLKRWDIGDDHMSKALSFIKSNIASATDENQRSPVGFDIIFPGMIEYAKDLNLNLPLASMNVDALVQKKELELRSCCSNSEGGKAYLAYVSEGIGKLQDWEMVMRYQRKNGSLFSSPSTTAVAFMHRNDDGCFNYLRSVLQKFHSSVPAIYPLDIYARLHMVDSLQKLGIDGHFKDEIRSVLDETYSCWMQGEENIFLDASTCAMAFRMLRVEGYDVSSDQLTQFSEGLFSNCLGGHLKDFSASLELFKASQIIIYPDEFILENINSWTSRFLNHGLSSGSVHSDRTERLVKQEAVNAFEFPYNSTLERLSNKRALESYSGDIVRISKTAYACLNFGHQDFLELAVEDFNTLQGIHRKELKELEKWVIENKLDKLKFARQKLAYCYFSAAATLTSPELCDARLSWAKNGVLTTVVDDFFDVGGSEEELVGCQWGNGLLFQGG* 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11941684 11947918 - CsaV3_7G023060.1 Csa07g01217 536780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01217 494 PANTHER ENT-KAUR-16-ENE SYNTHASE, CHLOROPLASTIC 1 480 - -
Csa07g01217 494 Pfam Terpene synthase family, metal binding domain 394 480 IPR005630 GO:0000287|GO:0010333|GO:0016829
Csa07g01217 494 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 1 480 - -
Csa07g01217 494 Gene3D - 1 192 - -
Csa07g01217 494 Pfam Terpene synthase, N-terminal domain 151 343 IPR001906 GO:0010333|GO:0016829
Csa07g01217 494 SFLD Terpene Cyclase Like 1 N-term 9 384 - -
Csa07g01217 494 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 7 177 IPR008930 -
Csa07g01217 494 Gene3D Farnesyl Diphosphate Synthase 405 484 IPR008949 -
Csa07g01217 494 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 161 373 IPR008930 -
Csa07g01217 494 Gene3D - 193 401 IPR036965 GO:0010333|GO:0016829
Csa07g01217 494 SUPERFAMILY Terpenoid synthases 391 481 IPR008949 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02337 Csa-Chr6:20947201 Csa07g01217 Csa-Chr7:11941684 8.24E-80 dispersed
Csa07g01217 Csa-Chr7:11941684 Csa02g02738 Csa-Chr2:23860891 5.49E-24 dispersed
Csa07g01217 Csa-Chr7:11941684 Csa03g00574 Csa-Chr3:4925550 4.67E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01217 K04121 - csv:101217426 964.526