Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01218 ATGTTCCATCCTAAGAAAGCTTCGACTATGAATTCTCACGATAGAGGGATGTGCGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAACTTCATGAGCGCTTCGTCGATGCCGTCACTCAGCTCGGAGGCCCTGATAAGGCCACCCCAAAAACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACTCTGTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTGGGAAAGCAACCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCTTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAACATGATCAACCGCACCATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAACTAGAGGTGCAAAGACACTTGCAACTGCGAATAGAGGCACAAGGGAAGTACATGCAAAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGTGGGATCCCAAATAACAATAATAATCAGCAAGGCATTGCTGATATGACCGGAGCTGGCGGAGGGATCAAAGATTTTGGCTCCCCTCTTGGCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCAGCTTGATCTTCAGCAAAACGTGGATGGATTCATGTCTCACAACGACAGCTTACTGTGCTTGGGAAAGAAGAAGTCTAGGCCGACACCAAGTACGCCAAACTACGGGGGCAGCTCGGGAAAAGGTGCGTTGGACTGGCCAGATGATCTCCGGCTGCAAGATATAGGAATGGCGCCGCCCACGTCGTGCGTAGGGCAGCAAGAAGATGATTTCAAAGGCATTGGTGGGACGCTGGTGGCCGGAAGAGATCATTTGGAGGAAATGTATGAGGCGAAGCCAGTAGTGTCGGATGATGAAGGCATGGGAGATCACAAGAAGTATGACGTCAATAACAACAACAACAATAGTAATAATTCGTCCATAAAGCTTCAGAGGCCGTCCCCCCGAAGGGTTCCCCTTTCCGTGGATAGGGCTAACCACCCTCTCATTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA 1146 49.56 MFHPKKASTMNSHDRGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQGIADMTGAGGGIKDFGSPLGFPSFQDLNLYGGDQLDLQQNVDGFMSHNDSLLCLGKKKSRPTPSTPNYGGSSGKGALDWPDDLRLQDIGMAPPTSCVGQQEDDFKGIGGTLVAGRDHLEEMYEAKPVVSDDEGMGDHKKYDVNNNNNNSNNSSIKLQRPSPRRVPLSVDRANHPLITTAPQSTHSPFG* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11974425 11977379 + CsaV3_7G023070.1 Csa07g01218 536781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01218 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Csa07g01218 381 MobiDBLite consensus disorder prediction 367 381 - -
Csa07g01218 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 281 - -
Csa07g01218 381 MobiDBLite consensus disorder prediction 248 269 - -
Csa07g01218 381 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Csa07g01218 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 281 IPR044848 GO:0003700
Csa07g01218 381 Gene3D - 31 89 - -
Csa07g01218 381 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677
Csa07g01218 381 MobiDBLite consensus disorder prediction 319 381 - -
Csa07g01218 381 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Csa07g01218 381 Pfam MYB-CC type transfactor, LHEQLE motif 127 167 IPR025756 -
Csa07g01218 381 MobiDBLite consensus disorder prediction 333 351 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa06g01145 Csa07g01218 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04029 Csa-Chr3:35194253 Csa07g01218 Csa-Chr7:11974425 3.50E-55 dispersed
Csa06g03415 Csa-Chr6:28239422 Csa07g01218 Csa-Chr7:11974425 7.72E-45 dispersed
Csa06g03417 Csa-Chr6:28244544 Csa07g01218 Csa-Chr7:11974425 4.11E-43 dispersed
Csa01g03397 Csa-Chr1:30704045 Csa07g01218 Csa-Chr7:11974425 1.86E-34 transposed
Csa02g00846 Csa-Chr2:7783744 Csa07g01218 Csa-Chr7:11974425 2.50E-50 transposed
Csa03g01095 Csa-Chr3:8674955 Csa07g01218 Csa-Chr7:11974425 1.23E-69 transposed
Csa03g02617 Csa-Chr3:24717663 Csa07g01218 Csa-Chr7:11974425 3.21E-37 transposed
Csa03g03641 Csa-Chr3:32464112 Csa07g01218 Csa-Chr7:11974425 2.88E-48 transposed
Csa06g01145 Csa-Chr6:9545350 Csa07g01218 Csa-Chr7:11974425 2.66E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32314 PF00249 Myb_DNA-binding 2.10E-06 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01218 - - csv:101217821 759.985