Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01218 ATGTTCCATCCTAAGAAAGCTTCGACTATGAATTCTCACGATAGAGGGATGTGCGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAACTTCATGAGCGCTTCGTCGATGCCGTCACTCAGCTCGGAGGCCCTGATAAGGCCACCCCAAAAACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACTCTGTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTGGGAAAGCAACCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCTTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAACATGATCAACCGCACCATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAACTAGAGGTGCAAAGACACTTGCAACTGCGAATAGAGGCACAAGGGAAGTACATGCAAAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGTGGGATCCCAAATAACAATAATAATCAGCAAGGCATTGCTGATATGACCGGAGCTGGCGGAGGGATCAAAGATTTTGGCTCCCCTCTTGGCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCAGCTTGATCTTCAGCAAAACGTGGATGGATTCATGTCTCACAACGACAGCTTACTGTGCTTGGGAAAGAAGAAGTCTAGGCCGACACCAAGTACGCCAAACTACGGGGGCAGCTCGGGAAAAGGTGCGTTGGACTGGCCAGATGATCTCCGGCTGCAAGATATAGGAATGGCGCCGCCCACGTCGTGCGTAGGGCAGCAAGAAGATGATTTCAAAGGCATTGGTGGGACGCTGGTGGCCGGAAGAGATCATTTGGAGGAAATGTATGAGGCGAAGCCAGTAGTGTCGGATGATGAAGGCATGGGAGATCACAAGAAGTATGACGTCAATAACAACAACAACAATAGTAATAATTCGTCCATAAAGCTTCAGAGGCCGTCCCCCCGAAGGGTTCCCCTTTCCGTGGATAGGGCTAACCACCCTCTCATTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA 1146 49.56 MFHPKKASTMNSHDRGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQGIADMTGAGGGIKDFGSPLGFPSFQDLNLYGGDQLDLQQNVDGFMSHNDSLLCLGKKKSRPTPSTPNYGGSSGKGALDWPDDLRLQDIGMAPPTSCVGQQEDDFKGIGGTLVAGRDHLEEMYEAKPVVSDDEGMGDHKKYDVNNNNNNSNNSSIKLQRPSPRRVPLSVDRANHPLITTAPQSTHSPFG* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11974425 11977379 + CsaV3_7G023070.1 Csa07g01218 536781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01218 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Csa07g01218 381 MobiDBLite consensus disorder prediction 367 381 - -
Csa07g01218 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 281 - -
Csa07g01218 381 MobiDBLite consensus disorder prediction 248 269 - -
Csa07g01218 381 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Csa07g01218 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 281 IPR044848 GO:0003700
Csa07g01218 381 Gene3D - 31 89 - -
Csa07g01218 381 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677
Csa07g01218 381 MobiDBLite consensus disorder prediction 319 381 - -
Csa07g01218 381 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Csa07g01218 381 Pfam MYB-CC type transfactor, LHEQLE motif 127 167 IPR025756 -
Csa07g01218 381 MobiDBLite consensus disorder prediction 333 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01218 - - - csv:101217821 759.985
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa06g01145 Csa07g01218 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04029 Csa-Chr3:35194253 Csa07g01218 Csa-Chr7:11974425 3.50E-55 dispersed
Csa06g03415 Csa-Chr6:28239422 Csa07g01218 Csa-Chr7:11974425 7.72E-45 dispersed
Csa06g03417 Csa-Chr6:28244544 Csa07g01218 Csa-Chr7:11974425 4.11E-43 dispersed
Csa01g03397 Csa-Chr1:30704045 Csa07g01218 Csa-Chr7:11974425 1.86E-34 transposed
Csa02g00846 Csa-Chr2:7783744 Csa07g01218 Csa-Chr7:11974425 2.50E-50 transposed
Csa03g01095 Csa-Chr3:8674955 Csa07g01218 Csa-Chr7:11974425 1.23E-69 transposed
Csa03g02617 Csa-Chr3:24717663 Csa07g01218 Csa-Chr7:11974425 3.21E-37 transposed
Csa03g03641 Csa-Chr3:32464112 Csa07g01218 Csa-Chr7:11974425 2.88E-48 transposed
Csa06g01145 Csa-Chr6:9545350 Csa07g01218 Csa-Chr7:11974425 2.66E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1171 Blo04g00455 Blo13g00605 . . Bpe07g00477 . Bma08g00825 . . . . . . . . . . Bhi05g01981 Tan02g0015 Cmetu01g1460 Lac12g0030 . . . Cla02g01833 Cam02g1942 Cec02g1969 Cco02g2008 Clacu02g1922 Cmu02g1871 Cre02g2184 . . . . . Csa07g01218 . Cme11g01645 Blo15g00640 . . . Bpe15g00926 . Bma03g00488 Bma12g00569 Sed01g0770 . . . . . . Cpe15g00910 Cpe05g01028 Bhi10g00928 Tan05g0578 Cmetu11g1511 . Hepe08g0654 . . . . . . . . . . Csa06g01145 Chy11g01047 Cme01g01493
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g01095 . 12 262 G2-like Transcription Factor Family AT3G24120 60.5 1.6e-71 266.5
Csa06g03417 . 31 195 G2-like Transcription Factor Family AT3G24120 59.2 2.1e-44 176.4
Csa06g01145 CCT 22 195 G2-like Transcription Factor Family AT3G24120 57.4 3.1e-43 172.6
Csa07g01218 CCT 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Csa03g02731 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 7.8e-39 157.9
Csa03g01797 . 241 399 G2-like Transcription Factor Family AT5G16560 61.5 3.9e-41 166.0
Csa03g04154 CCT 1 161 G2-like Transcription Factor Family AT5G42630 59.0 1.9e-37 152.9
Csa06g00332 . 20 258 G2-like Transcription Factor Family AT1G25550 54.8 3.7e-51 198.7
Csa05g02583 . 19 258 G2-like Transcription Factor Family AT1G25550 52.0 3.5e-49 192.2
Csa04g01908 . 1 302 G2-like Transcription Factor Family AT5G05090 56.2 6.6e-74 274.2
Csa03g03685 . 1 287 G2-like Transcription Factor Family AT5G05090 54.7 1.5e-70 263.1
Csa03g01095 . 12 298 G2-like Transcription Factor Family AT4G13640 51.7 6.5e-54 208.0
Csa03g01095 . 12 262 G2-like Transcription Factor Family AT3G24120 60.5 1.6e-71 266.5
Csa06g03417 . 31 195 G2-like Transcription Factor Family AT3G24120 59.2 2.1e-44 176.4
Csa06g01145 CCT 22 195 G2-like Transcription Factor Family AT3G24120 57.4 3.1e-43 172.6
Csa07g01218 CCT 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Csa03g02731 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 7.8e-39 157.9
Csa02g00846 . 3 252 G2-like Transcription Factor Family AT1G69580 50.9 2.0e-51 199.9
Csa07g01218 CCT 1 382 G2-like Transcription Factor Family AT1G79430 54.2 3.2e-87 318.9
Csa06g01145 CCT 1 364 G2-like Transcription Factor Family AT1G79430 51.5 1.5e-76 283.5
Csa03g01095 . 39 198 G2-like Transcription Factor Family AT1G79430 63.0 3.2e-39 159.5
Csa06g03415 . 54 262 G2-like Transcription Factor Family AT2G01060 64.3 8.3e-52 200.7
Csa04g01908 . 1 302 G2-like Transcription Factor Family AT3G10760 62.2 2.9e-90 328.9
Csa03g03685 . 1 287 G2-like Transcription Factor Family AT3G10760 59.1 8.9e-84 307.4
Csa04g01908 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 1.3e-60 229.9
Csa03g03685 . 1 199 G2-like Transcription Factor Family AT2G40970 60.0 1.3e-58 223.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32314 PF00249 Myb_DNA-binding 2.10E-06 CL0123 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01218 Csa_Chr07 FPKM 4.175291 5.23054 6.489228 7.167878 9.379263 11.503617 10.749716 6.2092 5.048881 6.01163