Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01225 ATGGCCCATTTATTCATCTCCGACGAGGAGTTCTCTCGTCACTCTGACGACGCTGCTTTTTTGGCCGAGAAGGCCGATGCCTTCATCCAAGGTCTCCGCAGTGAGCTCGAGACCGTCAGAGCTCAAGCTGATGCTGCTTCAATCACCGCGGAGCAGACTTGTTCTCTTCTTGACCAGAAGTTCCTCTCTCTTTCAGCTGAGTTCTCTGACCTCCAGTCTCAGAATGCACAGCTTCAAACGACCCTCGAACTCAGGCTCTCCGAGCTTGCAGAAGTCAAGTCCCAAAAACACCAACTCAATTTACTTTCCATTGGGAAGGATGGTGAGATAGAGAGGTTAAATACAGAGTTATCTGAACTGCATAAATCAAAAAGACAGTTGATGGAGCTTATCGAGCATAAGGACTTAGAAATTGGTGAAAAAGATTCCACTATAAAGAGTTATCTTGACAAGATTGTCAATTTGTCCGAGACAGCTGCTCAAAGAGAAGCCCGTATAAGCGAGGTCGACATGGAGTTGGTGCGCTCCCGAGCTGACTTCGCTCGTCTTACACAGGAAAAAGAACTTATCGAGAGGCATAACGTGTGGCTTAACGATGAATTAACTGCTAAAGTAGGCAGTGTCATTGACCTGCGTAGGCTTCATTCTGATACTGAGGCTGAACTGTCTGCAAAACTTAGAGATGTTGAGAGGCAGTTGGATGAATGCGCTAGCTCCTTAAAATGGAACAAGGATAGTGTGAAAGAACTTGAGATGAAGCTAACATCTGCACAGGAGGAATTGTGTTCGTCAAGAAGAATGGCTTCAGAAAATGAGGAACGTCTTTGTGCTGAAATATCAACAGTCAATAAGCTTGTTGAACTTTACAAAGAAAGTTCTGAGGAGTGGTCTAAGAAGGCAACAGAACTGGAGGGTGTCGTAAAAGCCTTGGAGACACATTTGAACCAAATTGAGAGTGATTATAAAGAAAAGCTTGTAAAGGAAGAATCTCAAAGGATTCATTTGGAAGAGGAGGCTACAAATTTGAAAGTGAAACTGGAAAAGTGTGAAGCGGAGATTGAACTTAGTAGGAAAAAGAATGAACTCACTCTTTTTCCCCTTGGCAGCTTTTCTCCAGATGTTTTGATAAACCCGAAGGAAAATAGTGATGTGGTTGGTGGGAATCACAACTTCGGCCCCATGATTCCCGTAGGTGTTTCTGGGACAGCATTAGCTGCTTCGCTTCTGCGTGATGGTTGGAGTTTAGCCAAAATGTATGCCAAGTACCAGGAAACTGTGGATGCTTTGCGGCATGAGCAGATGGGAAGGAAAGATGCCGAGGCAGTTCTGCAGAAGGTGCTATATGAACTTGAAGATAAAGCAGAAGTCATTTTGGAGGAAAGAGCGGAACATGAGAGAATGATCGAGTCATATTCCCTGCTAAACCAAAAATTGCAAAATTCTATATCTGAACAGGAAATCCTGGAGAAAACTCTCCAAGAATTGAAGGCTGATTTGAAGAGACATGAGCGTGATTACTTGTTAATTCATAGAGAGAACATCGACCTTTCAAGACAGGTTACAATTCTTCTGAAGGAATGTCGAGATGTGCAACTTCGCTGTGGATATGTAGGAAATGATGTTCCCAAGAATATTTCAAATCCTACATCCTTTGAGATCAATATGGAATCTGATGCTGATAGAGTTATTTCTGAATATCTTTTAACCTTCAAGGACATAAATGGATTAGTTGAGCAGAATGTCCAGCTTAGAAGCCTTGTACGTAAACTTTCAGTGCAGCTTCAAGATACAGAGCTTGATTTCAAGGAGAAATTGGAGGCTGAACTGAAAAGGAAAACTCAAGAAGCTGCATCTAGAGTTGAAGCAGTGTTACAAAAAGTTGAAGAACAGGGGCAGATGATTGAGTCTCTTCATGCTTCCGTTGCCATGTACAAAAGGCTATATGAAGAGGAGCATAAGCGTAATTTGCATCTTCCCCTATCTGCTGGAGTTGCTCTAGATTTTGGTCGAAAGGAACTTGAGTTTGTTTCTAAAGATTCTCAGGAGGCCAGAAAAGCTGATCACGAGCAGGCTGCTAAACGAATAAGATATCTCGAGGAAGAACTCGAAAAATCTAGAAGTGAGGTAAATTTTGTTAGAGCTGAACGTAACAAGTTTGAACTGGAGATCGGTTTTGCAAAAGAAAAACTGGATAGTTTCATGAAGGAATTTGAGCAACAGAGAGTAGAAATGAATGGCGTGTTAGCTCGAAATGTAGAGTTCTCACAACTTATTGTAGACTACCAAAGAAAACTGCGGGAAGTTTCAGAATCCCTGCACAGTGCTGATGAACAGTCCCGGAAATTGAGTATTGAGGTGTCTGTCTTAAAGTCTGAAAAGGACTTGTTATCAAATGCTGAAAAGAGAGCACAGGATGAAATTCAAAAACTGTCTGAAAGATTATTCCGGGTGCAGACATCTCTTGATACTATTCGAAGTGTTGAAGAAGTTCATGAGGAGGTTAGGGTTGTAGAAAGGAGAAAGCTGGAGGAACATGCTAAGCAACTTGAGAGGGAATGGGCTGAAGCAAAGAAAGAGTTGCAAGAAGAGAGGGACAATGTTCGAACTCTTACTCTTGATCGTGAGAAGACTTTAAAGAATGCAATGAGTCATGTTGAAGAGATGGGGAAGGAACTTGCAAATGCATTACATGCCACTGCAGCTGCTGAGGCAAGAGCTGCTGTTGCTGAGGCTAAACTGTCTGATCTTGAGAAGAAAATTTGTGCTTCAGATAATCAGGTCATTGAGTTGGATGATAGAAGTGAACTTAGTTCCCGTCCTCCAAATCAGGTTGCAACAGATTTGCGTAGAGCAGAGGCAGAGATTCAGAAATTTAAAGAAGAAGCACAAGCTTGTAAAGATCACATGCTACAGTACAAGAGCATTGCTCAGGTAAATGAAGAAGCTGTGAAACAGATGGAATGTGCTCATGAAACTTTCAAGATTGAGGCTGAGAAAATGAAGAAATCATTAGAAGTTGAACTTCTTCAGCTTAGAGAGAGGATTGCTGAACTCGAAAATGAATCTGTTTTAAAATCTCAAGAAATAGCTTCTGCTGCTAGTTTGAAGGAAGAGGCTATTGCGTCTTCTCTGGCAGAAATTAAAAATCTTAATGAAGAGAACACTGCAAAAACGTCTAAGATTCAGGAAATGGAAATTCAGATATCTTATTTAAAAGAAGATTTGGAAAGACAACAGCAAAAATGGCGTACTGCTCAAGCTAATTATGAGAGACAGGTTATTCTCCAGTCAGAGACAATTCAGGAGCTAACAAAAACTTCCCAAGCTTTGGCTGCTGTACAAGAGGAGGCAGCTGAGCTTCGTAAATTAGCTGAAGCTTACAAAACAGAAAATGAAGAACTAAAGGCCAAATGGGAAGGTGGGAGGGTAGCCCTTGAGGATTTAAAGAATAAGGCTGACAAGGCTTACTCTGAACTCAATGAACAGAATAAAATTCTGCATGCTCAACTTGAGGCTTTCCACATTCGATTGGTGGAGAAGGATCAAAAGTTGGCTGGAGTTCCATCTGAAAGTAATACTACTGAAATTGTCGGGGATGCTGGTATTCAGAGTGTGGTTAGTTACCTCAGAAGAACGAAAGAAATTGCTGAAGTAGAGATCTCCTTGCTAAAGAAGGACAAGTTGAGATTGCAGTCACAATTAGAAAGTGCTCTTAAAGCCGTGGAGAGTGCACAAACTTCACTTAATGTCGAGCGTCAAAGCTCAAAAGCATTATTGTTAACCGAGGAGGAAATTAAGTCTTTACAACTTCAGGTTAGGGAGATGAACTTGCTTCGTGAAAGCAATATTCAATTGCGAGAAGAGAATAAGCACAATTTTGAGGAATGCCAGAAACTACGTGAAGAATCTAGAAAGTCTAAAAGTGAAATAGAGAAGTTTGAGGGCATGCTGAAGATGAGACAAATGGAGGTGGAATCCTGTAAAATGGAAATTGAATCGCAGAATGTGGAGAAGACTCACCTTGAAAGCAGAGTCTTGGAGTTGCTTGAAAGATCTAAAAATATAGATTATGAAGATTACAATCGTGTGAAGGACGATGTTCAAAGAATGCAGATGGAGCTGAATGAGAAAGATGCAGAAATTGCAAAAGTCAAAATGTTAATCTCTGAAAGACAGGAATCAATATCTCAGTTGGAGCAAGACCTTTCTAATTGCAGATCTGAAGTGAAGGAAAGGGAGAAAAGGTTGAATGATATTCAACAGATGGAGGCCAATCTGAGGGCTGATATGGAGAAACAGAAGAAGTACATTTCTCAGTTTAAGAGAAAACTTGAAATTGTCTCAAAGGAGAAGGATGAATTGGGCAAAGAGAATCAAGCTCTTTTGAGGCAGTTGGAAGACACTAAACAAGTGAATACTGTCGGTAAAAGGTCCACTGGAGATTCAACTGGTGAGCAGGCCATAGAAGAAAAGGACACTAAAATTCAGATTCTTGAGAAACATCTGGAGAGGCTTAGAGAAGAACTAAAAAGAGAGAAGGATGATAGTCGTACAGAGAAAAGCAGGCGTTTGAAAATTGAGAAGGCCATAAAGGATTCATATACTAAAGTCGAGCAGGAAAAATCAAAGATTTTAAATGACTTGGAGAAGCATAAGGGAAACTTGAAGCAGGTTTCTGAAGAACTTAGACAATCTAAAAGCAATCTTTCGGAGGATGCTTTCCCTCATCCCCTTTCAGTGATTGGTTTGGACGAGAATGCTTCTACCTACGTTTTAGCTGCTGAAAATTTTGAGAAGACTGTGCAGTCAGTTTTGACTGATCTTGGAGTTCAAAATGTTCCTTCTGAGGCTCCTCTGGCCACAGATGCTTTGGTACAAACTAGCACAGGTCTTGATGTTCCTCTCCAAACGCCTGATGTGGCACCTTTGGCTCCTGTAACAACTAACTTTCCTGCCAAAGCATTGGAAGAACGGGAAAAGAAAGTTAATTTATCCAAGGCAAAAGTAGAAACACGTAGAGCAGGGCGGAAGTTGGTTCGACCTCGTCTTGGAAAACCAGAAGGAGGGCCTCAGGGTGATATAGACATGTTAGCATCAGAACTACCAAGCAATGAAATCAGGCGTGTAACTTCTGGAAAATCAGAAACGGAAGGTGAATCAACTACATCAGCCCATCAGCTGGCTCGCAAACGTGTAGCTTCATCAACTTCTGAATTGCATGAACATCCAATTATTCATGGGGAGATCAGTTCTGAAGTGGCAGCTCCTGTCATGAAGAGGGCTAAGGGGTGCGATACCTTGGCTGATGAAGTTGGTGGTCCATCCTCTTCAACTTTGGAAAGTCTCAAAACTCAGCCACCTTTAGAAGAAGCTTCTGATATTTGTGAGTTTCCTCACGGATCAAATGAGGAAGCAGTTGATGTTGAAAAAGAGATTGAAATAGCAGGGGAGAAGACTGATAGGCCGAAAGAGCTATCAGATGGATCTATGAGCCATGATGAGATACATACTGATAGGAAAGAAATGCTGGATGAAAATCTGGATAGGCAGATTGGAGCGGAGGTGTCAGATGATGGGTTAAAAGATCAAGCTGAACCAGACAATTGGCATCTAACTTCGGAGATTGGGAGTGAGAGAGAGGAAGGAGAGCTAGCACCTGAAGTTACGGAACTTGAGGGTGGTAATATTATTGAAAGCGTTGAAATAGGGGAGGATCATAATGAACCAATTGCAACACCCGATGCTTCCCCCTCTAGAGTTGATGATGATACTCTGGCTGTGACAGCCATGGAGATCGGCGAGATTAACTCTCCTGAAATACAAAATGAAGATAAAAATGACGAAGGTGATATGGTTGATGAAACTTCAGAAATTCAAGATAAGTCAACTGATTGTAACCAAATTGATTTGGAGAGTGATCAGGCTGTTGAAACTACCTCAGTAGCTACTGAGAATACTCCTAGTACACCCCCGGACGTAAATGACTCTAAACAAGGTAGTCCTACCGTTGCTAAAAGGTCATCTCCTGTCAGTAGTAGCACGTCTACTACAATAAATTTGCAGGAGCGAGCCAAGGAAAGAGCTATGCTGAGACAGGCTGGAGTTGTTTCTTCATTGGATAGACGACCTGTGAGAACATTACGTGGTCGGGGTGGTCGAATAGAGCGTGGTGGCCGTGGTCAACGATCTGGGCGGGGACCACCTGGTGATTCAAATAGAAGTTAA 6225 41.85 MAHLFISDEEFSRHSDDAAFLAEKADAFIQGLRSELETVRAQADAASITAEQTCSLLDQKFLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSELHKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRADFARLTQEKELIERHNVWLNDELTAKVGSVIDLRRLHSDTEAELSAKLRDVERQLDECASSLKWNKDSVKELEMKLTSAQEELCSSRRMASENEERLCAEISTVNKLVELYKESSEEWSKKATELEGVVKALETHLNQIESDYKEKLVKEESQRIHLEEEATNLKVKLEKCEAEIELSRKKNELTLFPLGSFSPDVLINPKENSDVVGGNHNFGPMIPVGVSGTALAASLLRDGWSLAKMYAKYQETVDALRHEQMGRKDAEAVLQKVLYELEDKAEVILEERAEHERMIESYSLLNQKLQNSISEQEILEKTLQELKADLKRHERDYLLIHRENIDLSRQVTILLKECRDVQLRCGYVGNDVPKNISNPTSFEINMESDADRVISEYLLTFKDINGLVEQNVQLRSLVRKLSVQLQDTELDFKEKLEAELKRKTQEAASRVEAVLQKVEEQGQMIESLHASVAMYKRLYEEEHKRNLHLPLSAGVALDFGRKELEFVSKDSQEARKADHEQAAKRIRYLEEELEKSRSEVNFVRAERNKFELEIGFAKEKLDSFMKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEKDLLSNAEKRAQDEIQKLSERLFRVQTSLDTIRSVEEVHEEVRVVERRKLEEHAKQLEREWAEAKKELQEERDNVRTLTLDREKTLKNAMSHVEEMGKELANALHATAAAEARAAVAEAKLSDLEKKICASDNQVIELDDRSELSSRPPNQVATDLRRAEAEIQKFKEEAQACKDHMLQYKSIAQVNEEAVKQMECAHETFKIEAEKMKKSLEVELLQLRERIAELENESVLKSQEIASAASLKEEAIASSLAEIKNLNEENTAKTSKIQEMEIQISYLKEDLERQQQKWRTAQANYERQVILQSETIQELTKTSQALAAVQEEAAELRKLAEAYKTENEELKAKWEGGRVALEDLKNKADKAYSELNEQNKILHAQLEAFHIRLVEKDQKLAGVPSESNTTEIVGDAGIQSVVSYLRRTKEIAEVEISLLKKDKLRLQSQLESALKAVESAQTSLNVERQSSKALLLTEEEIKSLQLQVREMNLLRESNIQLREENKHNFEECQKLREESRKSKSEIEKFEGMLKMRQMEVESCKMEIESQNVEKTHLESRVLELLERSKNIDYEDYNRVKDDVQRMQMELNEKDAEIAKVKMLISERQESISQLEQDLSNCRSEVKEREKRLNDIQQMEANLRADMEKQKKYISQFKRKLEIVSKEKDELGKENQALLRQLEDTKQVNTVGKRSTGDSTGEQAIEEKDTKIQILEKHLERLREELKREKDDSRTEKSRRLKIEKAIKDSYTKVEQEKSKILNDLEKHKGNLKQVSEELRQSKSNLSEDAFPHPLSVIGLDENASTYVLAAENFEKTVQSVLTDLGVQNVPSEAPLATDALVQTSTGLDVPLQTPDVAPLAPVTTNFPAKALEEREKKVNLSKAKVETRRAGRKLVRPRLGKPEGGPQGDIDMLASELPSNEIRRVTSGKSETEGESTTSAHQLARKRVASSTSELHEHPIIHGEISSEVAAPVMKRAKGCDTLADEVGGPSSSTLESLKTQPPLEEASDICEFPHGSNEEAVDVEKEIEIAGEKTDRPKELSDGSMSHDEIHTDRKEMLDENLDRQIGAEVSDDGLKDQAEPDNWHLTSEIGSEREEGELAPEVTELEGGNIIESVEIGEDHNEPIATPDASPSRVDDDTLAVTAMEIGEINSPEIQNEDKNDEGDMVDETSEIQDKSTDCNQIDLESDQAVETTSVATENTPSTPPDVNDSKQGSPTVAKRSSPVSSSTSTTINLQERAKERAMLRQAGVVSSLDRRPVRTLRGRGGRIERGGRGQRSGRGPPGDSNRS* 2075
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12058487 12119553 + CsaV3_7G023140.1 Csa07g01225 536788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01225 2074 Coils Coil 602 630 - -
Csa07g01225 2074 Coils Coil 447 512 - -
Csa07g01225 2074 Coils Coil 1033 1092 - -
Csa07g01225 2074 Coils Coil 899 919 - -
Csa07g01225 2074 Coils Coil 1213 1233 - -
Csa07g01225 2074 Coils Coil 1534 1568 - -
Csa07g01225 2074 MobiDBLite consensus disorder prediction 1704 1733 - -
Csa07g01225 2074 Pfam TPR/MLP1/MLP2-like protein 1045 1172 IPR012929 GO:0006606
Csa07g01225 2074 MobiDBLite consensus disorder prediction 1766 2074 - -
Csa07g01225 2074 Coils Coil 839 866 - -
Csa07g01225 2074 Coils Coil 300 359 - -
Csa07g01225 2074 Coils Coil 789 813 - -
Csa07g01225 2074 MobiDBLite consensus disorder prediction 1666 1750 - -
Csa07g01225 2074 Coils Coil 688 722 - -
Csa07g01225 2074 MobiDBLite consensus disorder prediction 1796 1886 - -
Csa07g01225 2074 MobiDBLite consensus disorder prediction 1968 2022 - -
Csa07g01225 2074 Coils Coil 1282 1316 - -
Csa07g01225 2074 PANTHER NUCLEOPROTEIN TPR 1 2058 - -
Csa07g01225 2074 Coils Coil 1142 1169 - -
Csa07g01225 2074 Coils Coil 110 130 - -
Csa07g01225 2074 MobiDBLite consensus disorder prediction 1771 1785 - -
Csa07g01225 2074 Coils Coil 1357 1429 - -
Csa07g01225 2074 PANTHER NUCLEOPROTEIN TPR-RELATED 1 2058 - -
Csa07g01225 2074 Coils Coil 1437 1471 - -
Csa07g01225 2074 Coils Coil 948 968 - -
Csa07g01225 2074 Coils Coil 1103 1137 - -
Csa07g01225 2074 Coils Coil 1258 1278 - -
Csa07g01225 2074 Coils Coil 994 1028 - -
Csa07g01225 2074 MobiDBLite consensus disorder prediction 2043 2060 - -
Csa07g01225 2074 Coils Coil 758 778 - -
Csa07g01225 2074 Coils Coil 1488 1522 - -
Csa07g01225 2074 MobiDBLite consensus disorder prediction 1666 1683 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01225 K09291 TPR, MLP1, MLP2; nucleoprotein TPR - csv:101216510 3835.03
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1185 . . . . . . . . . . . . . . . . . Bhi05g01976 . . Lac12g0024 Hepe02g0006 . . . . . . . . . . . . . . Csa07g01225 . . . . . . Bpe15g00929 . Bma03g00486 . . . . . . . . Cpe15g00913 . . . . . . . . . . . . . . . . . Chy01g00837 Cme01g01492
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004038 1 2 1 1 1 1 1 2 2 3 1 1 1 3 2 1 1 1 1 1 1 1 1 3 3 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01225 Csa_Chr07 FPKM 11.849216 13.433901 15.09659 15.688275 7.273972 7.108033 7.942972 13.199611 13.645633 13.454193