Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01227 ATGGCTAATCAGCTGCACAGCTACAACTCCGCCTATGGTGCGGTGTCTGCCTCTGCCACTGCCACTGCGGTTCCATCTCTTCCCACCACGTACTCGACTTCCCGTTCCCTTTCCGACATCGTCTCCGGCCGTTATCTCCTGCCAGACTCGCTGTCCTCCGGTATCTCCATTAAGCACTCTGTTACTGATCGTGGTACCTCCATGTATTCGACTCAGAAAGAAGGCCCTATGTTGTCGTCTGCCGACATTGTTCCGAGAACGTCGCATTTGGTCTCTCAATTCTCTTGGCCGGGTTCTCACGTTGCAGCTGCGCTTGACTCTGTTGTTTCTGGCATCAAACGTTCTTCTGACGTGCTCTACGATCAGACTGTTTTGGGTTCCTATAACACTTTGGGGCAAAGTGAAGCCTGGTATACTTCAAATTCTTTAGCCAAGCGTCCTAGATTTGAAAGTACAAGCAATTTGCCTGTATATCCACAGAGGCCAGGAGAGAAGGACTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATCCCAGATTGGAAAGAGGTCCCACAAATAGCTAATAGTGAAGATCTCCCAGAAAGACTTGGGGATCCAGATTGTCCATACTTTCTGAAAACTCAAAGATGTAAATTTGGTTCAAGATGCAAGTTCAATCACCCTAAAGATAGATCTGATTCTGTGGGTGCTGAAAAATCTGATGCTTCATCATTACCTGAGAGACCTTCTGAGCCACTGTGTGCATTCTATGTTAAGACTGGAAATTGCAAATTCGGTATCAACTGCAAGTTCCATCACCCAAAAGATATCCAAATTTTATCGGGGGAAGAATATGGAAATAGCGAACAAACTTTGATGGTGAAGACAGAAGAAAGAGCTGGAGACTTCAAGCTTGTTAAGCCTCCTATTTCGTTGTCACCAGCCATAATGCACAATTCTAAAGGACTTCCGATTAGACCGGGTGAAGTGGATTGTCCATTCTACTTGAAAACTGGCAGTTGCAAGTATGGTACCACTTGCCGCTACAATCACCCTGACAGAAATGCAATCAATCCATCTACTCCTGCAATGGTTCATCCTGCTATGGTTTCAACTGCTAATATGAATACTGGATTTGTTAATCCTTCTAATGCAATTTATCAAGCTGTTGACCCCAGATTGATTCAGCCATTGTTGGGATCTGGCTCAAGTATTTACCCTCAACGACCTGGGCAGATAGAATGTGACTTTTATATGAAGACTGGGGACTGTAAATTTGGGGAACGCTGCAAATTTCATCACCCTATTGATCGGTCAGCACCAAAGCAGGGTGCTCTACATAATGTGAAACTAACACTGGCAGGACTACCGAGGAGAGAGGAGGCCATAATTTGTCCATATTATCTGAAAACTGGTACATGCAAGTATGGCACTACTTGCAAATTTGACCATCCACCTCCTGGAGAAGTGATGACAATGGCTGCCGTACAATCTGCTCCAGGAAAAGAAGGCGAAGATCGGATAGATGAATCAGTGGACGAACGGCTGTAG 1584 45.27 MANQLHSYNSAYGAVSASATATAVPSLPTTYSTSRSLSDIVSGRYLLPDSLSSGISIKHSVTDRGTSMYSTQKEGPMLSSADIVPRTSHLVSQFSWPGSHVAAALDSVVSGIKRSSDVLYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPQIANSEDLPERLGDPDCPYFLKTQRCKFGSRCKFNHPKDRSDSVGAEKSDASSLPERPSEPLCAFYVKTGNCKFGINCKFHHPKDIQILSGEEYGNSEQTLMVKTEERAGDFKLVKPPISLSPAIMHNSKGLPIRPGEVDCPFYLKTGSCKYGTTCRYNHPDRNAINPSTPAMVHPAMVSTANMNTGFVNPSNAIYQAVDPRLIQPLLGSGSSIYPQRPGQIECDFYMKTGDCKFGERCKFHHPIDRSAPKQGALHNVKLTLAGLPRREEAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAVQSAPGKEGEDRIDESVDERL* 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12133310 12152944 + CsaV3_7G023160.1 Csa07g01227 536790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01227 527 PANTHER CCCH ZINC FINGER/TIS11-RELATED 69 509 IPR045877 GO:0003729
Csa07g01227 527 SUPERFAMILY CCCH zinc finger 262 286 IPR036855 GO:0046872
Csa07g01227 527 ProSiteProfiles Zinc finger C3H1-type profile. 470 498 IPR000571 GO:0046872
Csa07g01227 527 SUPERFAMILY CCCH zinc finger 218 242 IPR036855 GO:0046872
Csa07g01227 527 SMART c3hfinal6 420 447 IPR000571 GO:0046872
Csa07g01227 527 SMART c3hfinal6 259 286 IPR000571 GO:0046872
Csa07g01227 527 SMART c3hfinal6 470 497 IPR000571 GO:0046872
Csa07g01227 527 SMART c3hfinal6 337 364 IPR000571 GO:0046872
Csa07g01227 527 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Csa07g01227 527 SMART c3hfinal6 213 240 IPR000571 GO:0046872
Csa07g01227 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 475 497 IPR000571 GO:0046872
Csa07g01227 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 339 363 IPR000571 GO:0046872
Csa07g01227 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 423 446 IPR000571 GO:0046872
Csa07g01227 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 163 187 IPR000571 GO:0046872
Csa07g01227 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 217 240 IPR000571 GO:0046872
Csa07g01227 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Csa07g01227 527 SUPERFAMILY CCCH zinc finger 163 188 IPR036855 GO:0046872
Csa07g01227 527 SUPERFAMILY CCCH zinc finger 341 364 IPR036855 GO:0046872
Csa07g01227 527 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Csa07g01227 527 ProSiteProfiles Zinc finger C3H1-type profile. 337 365 IPR000571 GO:0046872
Csa07g01227 527 MobiDBLite consensus disorder prediction 513 527 - -
Csa07g01227 527 ProSiteProfiles Zinc finger C3H1-type profile. 420 448 IPR000571 GO:0046872
Csa07g01227 527 SUPERFAMILY CCCH zinc finger 423 448 IPR036855 GO:0046872
Csa07g01227 527 MobiDBLite consensus disorder prediction 240 259 - -
Csa07g01227 527 ProSiteProfiles Zinc finger C3H1-type profile. 213 241 IPR000571 GO:0046872
Csa07g01227 527 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 69 509 - -
Csa07g01227 527 MobiDBLite consensus disorder prediction 508 527 - -
Csa07g01227 527 Gene3D - 418 510 - -
Csa07g01227 527 Gene3D - 255 374 - -
Csa07g01227 527 Gene3D - 160 254 - -
Csa07g01227 527 ProSiteProfiles Zinc finger C3H1-type profile. 259 287 IPR000571 GO:0046872
Csa07g01227 527 SUPERFAMILY CCCH zinc finger 473 497 IPR036855 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01227 - - - csv:101212896 1068.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01349 Csa-Chr6:11415829 Csa07g01227 Csa-Chr7:12133310 2.52E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1194 Blo04g00450 Blo13g00612 . . . . Bma08g00829 . . . . . . . . . . Bhi05g01975 Tan02g0011 . . . . . . . . . . . . . . . . . Csa07g01227 . . . . . . Bpe15g00932 . Bma03g00483 . . . . . . . . Cpe15g00914 . . . . . . . . . . . . . . . . . Chy01g00832 Cme01g01486
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004512 1 5 3 1 2 2 0 1 2 1 1 1 0 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 3 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32315 PF00642 zf-CCCH 8.80E-10 CL0537 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01227 Csa_Chr07 FPKM 22.486252 25.169338 7.252055 7.244818 2.225752 2.356096 1.671465 3.556833 3.3575 3.477313