Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01233 ATGAAGTACGTATTGGTTACTGGAGGTGTTGTTAGTGGACTGGGCAAAGGGGTCACTGCTAGTAGTATCGGTGTCCTCCTTAAAGCTTGCGGTCTTCGAGTTACTTCCATTAAGATTGATCCTTATTTAAACACAGATGCTGGTACCATGTCTCCTTTTGAGCACGGTGAAGTATTTGTCTTGGATGATGGTGGCGAGGTTGACCTGGACCTTGGAAACTATGAACGATTTTGTGATATCACGCTAACTCGTGATAACAACATCACAACTGGAAAAATATTTCAGTCTGTGATTGACAAGGAGAGAAGGGGTGATTACTTAGGAAAGACTGTTCAGGTTGTTCCACACATTACAGACGCAATCCAAGAATGGATTGAGCGTGTGGCAATGATACCAGTGGATGGTAAAGAAGGTCCAGCAGATGTGTGCGTAATTGAATTGGGTGGCACCATAGGAGATATTGAATCGATGCCATTTATTGAAGCACTTGGCCAATTTTCGTACCACGTAGGTCCTGGAAATTTCTGCCTGGTTCATGTTAGCCTTGTTCCGGTCCTCAATGTGGTTGGTGAACAGAAAACTAAGCCTACTCAACATAGTGTTCGAGGTCTAAGAGGCCTGGGTTTGGTACCAAATATTTTAGCTTGCCGCAGTACAAAGGAACTCGATGAAAATGTTAAGGAAAAACTTGCTCAATTTTGTCATGTGCCGGCAGATAATATAATCACTCTCTATGATGTGCCAAATATCTGGCATATTCCTCTGCTATTAAGAGATCAGAAGGCTCATACTGCACTCTTAAAAGGACTGAACCTTCACAGTGTAGCAGGAGAACCTGATTTAGATGGATGGACGACTAGGACAAGGTTATATGATAAATTACATGATTCCGTCAAAATTGCTATGGTTGGTAAATACACAGGCCTGTCAGATTCGTACCTCTCTGTATTAAAGGCCCTTTTACATGCTTCTGTCGCCAGCAATAGAAAGCTTGTTGTAGAATGGGTGCCAGCTGGGGATCTTGAAGATATTTCTGCCACAGAGGCCCCTGAGGTTTATGCAGCTGCATGGGAACTTTTAAAGGGTGCTGACGGTGTTCTAGTTCCAGGAGGTTTTGGTGATAGGGGAGTCCAAGGGAAAATTCTAGCAGCCAAATATGCTCGAGAGAATGGGATTCCCTTTCTGGGCATATGCCTGGGGATGCAAATTGCGGTTATTGAATTTGCCAGATCTGTTCTTGGTATACATGATTCTAACAGCACAGAGTTCGATCCTGAAACGACGAATCCTTGTGTGGTTTTTATGCCTGAGGGCTCAAAGACTCATATGGGAGGAACTATGCGTCTAGGGTCAAGGAGAACTTACTTTACTGTTATGGATTGCAAATCTGCACAGTTGTATGGCAATGTGAAGTTTGTTGATGAGCGACATAGACATAGATACGAGGTCAATCCGGAGATGGTATGTCAACTTGAAAATGCTGGTTTATCTTTCGTTGGCAGTGATGAAACAGGTCGTCGTATGGAGATTGTTGAACTAAGTGGCCATCCATACTTCGTGGGAGTTCAGTTTCATCCCGAATTTAAGTCCAGACCAGGAAAGCCTTCCCCGCTCTTCTTAGGGCTCATTAAGGCCGCGTGTGGCCAATTAGAGGCCTTTCTACAAAACAATGGGAATGTCATCCAATTTTCGGCAGATACGATAATCAATGGACACGCAAAGACAAAGATAAAGATTGTGCAAAATGGAGACACCCCAAAGTCTTCGAATGGGTATTTAAATGCCGCATATGGCAATTCAGTAGTTTGCCCCTTGAAAGATGTAAGCCACTGTTTATGA 1839 43.5 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFCDITLTRDNNITTGKIFQSVIDKERRGDYLGKTVQVVPHITDAIQEWIERVAMIPVDGKEGPADVCVIELGGTIGDIESMPFIEALGQFSYHVGPGNFCLVHVSLVPVLNVVGEQKTKPTQHSVRGLRGLGLVPNILACRSTKELDENVKEKLAQFCHVPADNIITLYDVPNIWHIPLLLRDQKAHTALLKGLNLHSVAGEPDLDGWTTRTRLYDKLHDSVKIAMVGKYTGLSDSYLSVLKALLHASVASNRKLVVEWVPAGDLEDISATEAPEVYAAAWELLKGADGVLVPGGFGDRGVQGKILAAKYARENGIPFLGICLGMQIAVIEFARSVLGIHDSNSTEFDPETTNPCVVFMPEGSKTHMGGTMRLGSRRTYFTVMDCKSAQLYGNVKFVDERHRHRYEVNPEMVCQLENAGLSFVGSDETGRRMEIVELSGHPYFVGVQFHPEFKSRPGKPSPLFLGLIKAACGQLEAFLQNNGNVIQFSADTIINGHAKTKIKIVQNGDTPKSSNGYLNAAYGNSVVCPLKDVSHCL* 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12209869 12218518 + CsaV3_7G023220.1 Csa07g01233 536796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01233 612 CDD CTPS_N 2 268 IPR017456 GO:0003883|GO:0006221
Csa07g01233 612 PANTHER CTP SYNTHASE 1 565 - -
Csa07g01233 612 Pfam Glutamine amidotransferase class-I 309 545 IPR017926 -
Csa07g01233 612 Pfam CTP synthase N-terminus 2 272 IPR017456 GO:0003883|GO:0006221
Csa07g01233 612 PANTHER CTP SYNTHASE 1 565 IPR004468 GO:0003883|GO:0006221
Csa07g01233 612 TIGRFAM PyrG: CTP synthase 1 545 IPR004468 GO:0003883|GO:0006221
Csa07g01233 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 272 IPR027417 -
Csa07g01233 612 SUPERFAMILY Class I glutamine amidotransferase-like 297 550 IPR029062 -
Csa07g01233 612 Gene3D - 295 561 IPR029062 -
Csa07g01233 612 CDD GATase1_CTP_Synthase 298 543 IPR033828 GO:0003883|GO:0006241
Csa07g01233 612 Hamap CTP synthase [pyrG]. 1 550 IPR004468 GO:0003883|GO:0006221
Csa07g01233 612 Gene3D - 1 292 IPR027417 -
Csa07g01233 612 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 299 552 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01233 K01937 pyrG, CTPS; CTP synthase [EC:6.3.4.2] - csv:101213614 1216.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03935 Csa-Chr6:31062245 Csa07g01233 Csa-Chr7:12209869 0 dispersed
Csa07g01233 Csa-Chr7:12209869 Csa07g01892 Csa-Chr7:18837590 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1196 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa07g01233 . . . . . . . . . . . . . . . . . Cpe15g00917 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000805 1 2 2 1 2 4 4 4 4 2 4 3 3 3 2 2 3 4 4 4 3 3 3 3 3 3 3 6 3 3 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g01233 Csa_Chr07 FPKM 1.784141 1.145409 1.953638 1.651972 1.766259 2.433832 2.133545 6.873068 4.771177 5.801514