Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01233 ATGAAGTACGTATTGGTTACTGGAGGTGTTGTTAGTGGACTGGGCAAAGGGGTCACTGCTAGTAGTATCGGTGTCCTCCTTAAAGCTTGCGGTCTTCGAGTTACTTCCATTAAGATTGATCCTTATTTAAACACAGATGCTGGTACCATGTCTCCTTTTGAGCACGGTGAAGTATTTGTCTTGGATGATGGTGGCGAGGTTGACCTGGACCTTGGAAACTATGAACGATTTTGTGATATCACGCTAACTCGTGATAACAACATCACAACTGGAAAAATATTTCAGTCTGTGATTGACAAGGAGAGAAGGGGTGATTACTTAGGAAAGACTGTTCAGGTTGTTCCACACATTACAGACGCAATCCAAGAATGGATTGAGCGTGTGGCAATGATACCAGTGGATGGTAAAGAAGGTCCAGCAGATGTGTGCGTAATTGAATTGGGTGGCACCATAGGAGATATTGAATCGATGCCATTTATTGAAGCACTTGGCCAATTTTCGTACCACGTAGGTCCTGGAAATTTCTGCCTGGTTCATGTTAGCCTTGTTCCGGTCCTCAATGTGGTTGGTGAACAGAAAACTAAGCCTACTCAACATAGTGTTCGAGGTCTAAGAGGCCTGGGTTTGGTACCAAATATTTTAGCTTGCCGCAGTACAAAGGAACTCGATGAAAATGTTAAGGAAAAACTTGCTCAATTTTGTCATGTGCCGGCAGATAATATAATCACTCTCTATGATGTGCCAAATATCTGGCATATTCCTCTGCTATTAAGAGATCAGAAGGCTCATACTGCACTCTTAAAAGGACTGAACCTTCACAGTGTAGCAGGAGAACCTGATTTAGATGGATGGACGACTAGGACAAGGTTATATGATAAATTACATGATTCCGTCAAAATTGCTATGGTTGGTAAATACACAGGCCTGTCAGATTCGTACCTCTCTGTATTAAAGGCCCTTTTACATGCTTCTGTCGCCAGCAATAGAAAGCTTGTTGTAGAATGGGTGCCAGCTGGGGATCTTGAAGATATTTCTGCCACAGAGGCCCCTGAGGTTTATGCAGCTGCATGGGAACTTTTAAAGGGTGCTGACGGTGTTCTAGTTCCAGGAGGTTTTGGTGATAGGGGAGTCCAAGGGAAAATTCTAGCAGCCAAATATGCTCGAGAGAATGGGATTCCCTTTCTGGGCATATGCCTGGGGATGCAAATTGCGGTTATTGAATTTGCCAGATCTGTTCTTGGTATACATGATTCTAACAGCACAGAGTTCGATCCTGAAACGACGAATCCTTGTGTGGTTTTTATGCCTGAGGGCTCAAAGACTCATATGGGAGGAACTATGCGTCTAGGGTCAAGGAGAACTTACTTTACTGTTATGGATTGCAAATCTGCACAGTTGTATGGCAATGTGAAGTTTGTTGATGAGCGACATAGACATAGATACGAGGTCAATCCGGAGATGGTATGTCAACTTGAAAATGCTGGTTTATCTTTCGTTGGCAGTGATGAAACAGGTCGTCGTATGGAGATTGTTGAACTAAGTGGCCATCCATACTTCGTGGGAGTTCAGTTTCATCCCGAATTTAAGTCCAGACCAGGAAAGCCTTCCCCGCTCTTCTTAGGGCTCATTAAGGCCGCGTGTGGCCAATTAGAGGCCTTTCTACAAAACAATGGGAATGTCATCCAATTTTCGGCAGATACGATAATCAATGGACACGCAAAGACAAAGATAAAGATTGTGCAAAATGGAGACACCCCAAAGTCTTCGAATGGGTATTTAAATGCCGCATATGGCAATTCAGTAGTTTGCCCCTTGAAAGATGTAAGCCACTGTTTATGA 1839 43.5 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFCDITLTRDNNITTGKIFQSVIDKERRGDYLGKTVQVVPHITDAIQEWIERVAMIPVDGKEGPADVCVIELGGTIGDIESMPFIEALGQFSYHVGPGNFCLVHVSLVPVLNVVGEQKTKPTQHSVRGLRGLGLVPNILACRSTKELDENVKEKLAQFCHVPADNIITLYDVPNIWHIPLLLRDQKAHTALLKGLNLHSVAGEPDLDGWTTRTRLYDKLHDSVKIAMVGKYTGLSDSYLSVLKALLHASVASNRKLVVEWVPAGDLEDISATEAPEVYAAAWELLKGADGVLVPGGFGDRGVQGKILAAKYARENGIPFLGICLGMQIAVIEFARSVLGIHDSNSTEFDPETTNPCVVFMPEGSKTHMGGTMRLGSRRTYFTVMDCKSAQLYGNVKFVDERHRHRYEVNPEMVCQLENAGLSFVGSDETGRRMEIVELSGHPYFVGVQFHPEFKSRPGKPSPLFLGLIKAACGQLEAFLQNNGNVIQFSADTIINGHAKTKIKIVQNGDTPKSSNGYLNAAYGNSVVCPLKDVSHCL* 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12209869 12218518 + CsaV3_7G023220.1 Csa07g01233 536796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01233 612 CDD CTPS_N 2 268 IPR017456 GO:0003883|GO:0006221
Csa07g01233 612 PANTHER CTP SYNTHASE 1 565 - -
Csa07g01233 612 Pfam Glutamine amidotransferase class-I 309 545 IPR017926 -
Csa07g01233 612 Pfam CTP synthase N-terminus 2 272 IPR017456 GO:0003883|GO:0006221
Csa07g01233 612 PANTHER CTP SYNTHASE 1 565 IPR004468 GO:0003883|GO:0006221
Csa07g01233 612 TIGRFAM PyrG: CTP synthase 1 545 IPR004468 GO:0003883|GO:0006221
Csa07g01233 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 272 IPR027417 -
Csa07g01233 612 SUPERFAMILY Class I glutamine amidotransferase-like 297 550 IPR029062 -
Csa07g01233 612 Gene3D - 295 561 IPR029062 -
Csa07g01233 612 CDD GATase1_CTP_Synthase 298 543 IPR033828 GO:0003883|GO:0006241
Csa07g01233 612 Hamap CTP synthase [pyrG]. 1 550 IPR004468 GO:0003883|GO:0006221
Csa07g01233 612 Gene3D - 1 292 IPR027417 -
Csa07g01233 612 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 299 552 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03935 Csa-Chr6:31062245 Csa07g01233 Csa-Chr7:12209869 0 dispersed
Csa07g01233 Csa-Chr7:12209869 Csa07g01892 Csa-Chr7:18837590 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01233 K01937 - csv:101213614 1216.06