Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01264 ATGGCGGTTTCCGGTAGCAATTCGACCCAGATTCACCCTTCTGACCAATCTCCCTCCACTTCTTCCGAAACTTCTCTATCCAACTTGAAAATCTACGCCGCCGTAGGTGTTATAGCTGCATGTATGATTGCGGCTTCTGGTTTAATCTTCTTATGTGTCCGTAGAAGTAGGGAATCGAGGAAGCATAAAATGCGGGTGAAACATAGTTCTGGGTTGATTCCATTGGTTTCCAAGGAGATCGCTGAGATTAAAGAGTCCGATCGGACTGTGGATTGCGAGAAAGGGGAAGTTATTAGGGTTGAGAATAAAAAGGAGATTGAGTTCGAGAATGGTGTAAGTAAGAAGAGTCAAGAAAGCGACGTGTCCGGAGGTGGTCGGAGCGATGTGTCGGTGGAGGATCCGAACTTAGGGTGGGGACGGTGGTATAGCTTGAAGGAACTAGAAATGGCGACTGATGGGTTTGTGGAAGAGAATGTGATCGGAGAAGGAGGCTACGGCATCGTGTACAGAGGAGTTTCGCCGGACGGTTCCGTCGTCGCCGTGAAGAATCTTCTTAATAATAAAGGTCAGGCAGAGAAAGAGTTCAAGGTTGAAGTAGAGGCCATTGGAAAAGTAAGGCACAAGAACTTGGTGGGTCTGATAGGTTATTGTGCAGAAGGAGCTCAGAGGATGCTTGTGTATGAATTTGTTGATAATGGCAACTTGGAGCAATGGTTACATGGTGATGTAGGGCCTGTTAGCCCTCTAACATGGGAGATTAGGATGAAGATTGCTCTTGGAACAGCAAAAGGTTTGGCCTATTTGCATGAGGGTTTAGAACCAAAAGTTGTGCACCGTGATGTAAAGTCCAGCAACATTCTCTTAGACAGAAAATGGAATGCAAAAGTGTCTGATTTTGGACTTGCAAAGCTCTTACAATCTGAAGCCAGCTACGTAACTACTCGTGTAATGGGTACCTTTGGATATGTCTCCCCAGAGTATGCAAGCACAGGCATGCTTAATGAGGGGAGTGATGTATATAGTTTCGGTGTTCTACTTATGGAGATCATTACTGGCAGAAGCCCAATTGACTATTCCCGGCCCCCAGGAGAGATGAACTTGGTGGACTGGTTTAAAGGGATGGTGGCAAATAGACGTGGTGAAGAGGTAGTAGATCCATTGATTGAGATTCCACCCTCTCCTAGAACTCTAAAGAGAGTGTTGCTTGTTTGTCTACGCTGCATTGATTTGGATGCCAATAAAAGGCCAAAGATGGGGCAAATCGTTCATATGCTAGAGGCAGATGATTTTCCTTATCGTTCGGAGCTTCGATCTGTGCGTGAGAAAGATAGCCAGCCTTCTGCTCGTTCAGATGTGCCGAGTAAACTTCCATTAAAGCATGCTGGTATAGATCACATGCAATAA 1404 45.66 MAVSGSNSTQIHPSDQSPSTSSETSLSNLKIYAAVGVIAACMIAASGLIFLCVRRSRESRKHKMRVKHSSGLIPLVSKEIAEIKESDRTVDCEKGEVIRVENKKEIEFENGVSKKSQESDVSGGGRSDVSVEDPNLGWGRWYSLKELEMATDGFVEENVIGEGGYGIVYRGVSPDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLIGYCAEGAQRMLVYEFVDNGNLEQWLHGDVGPVSPLTWEIRMKIALGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRKWNAKVSDFGLAKLLQSEASYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVANRRGEEVVDPLIEIPPSPRTLKRVLLVCLRCIDLDANKRPKMGQIVHMLEADDFPYRSELRSVREKDSQPSARSDVPSKLPLKHAGIDHMQ* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12604981 12609402 - CsaV3_7G023530.1 Csa07g01264 536827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01264 467 CDD STKc_IRAK 160 426 - -
Csa07g01264 467 Gene3D Phosphorylase Kinase; domain 1 128 229 - -
Csa07g01264 467 Pfam Protein kinase domain 155 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01264 467 Gene3D Transferase(Phosphotransferase) domain 1 230 439 - -
Csa07g01264 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Csa07g01264 467 PANTHER OS01G0323000 PROTEIN 16 442 - -
Csa07g01264 467 PANTHER OS03G0227900 PROTEIN 16 442 - -
Csa07g01264 467 SUPERFAMILY Protein kinase-like (PK-like) 130 426 IPR011009 -
Csa07g01264 467 SMART serkin_6 154 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01264 467 MobiDBLite consensus disorder prediction 1 23 - -
Csa07g01264 467 ProSiteProfiles Protein kinase domain profile. 154 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01264 467 MobiDBLite consensus disorder prediction 111 130 - -
Csa07g01264 467 MobiDBLite consensus disorder prediction 438 467 - -
Csa07g01264 467 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g01177 Csa-Chr7:11510722 Csa07g01264 Csa-Chr7:12604981 4.23E-156 dispersed
Csa07g01264 Csa-Chr7:12604981 Csa02g01935 Csa-Chr2:18160240 9.51E-177 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78488 PF00069 Pkinase 1.00E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01264 - - csv:101219201 906.36