Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01298 ATGATCAATTCTGTTTATTTCGTTTCGGGTTCATCATGTAACTGTGGTGGTGGGACTTCTTTGTTTATCCCAAATTCGTTGTTGGAAGAAGATGAACCAGTTGTGGATGTTAGAGATGATAATTCTGTTGCTCTTCCTGCATCCTTCTGGGTTAGATTAGCGATGAGAGTGTCTAGAGCCAGGTGGTTCATTTTCTTACGAAGGGTATTTCACTACCAGAATGGATCAAGATCAAATCTCGGGTCTGATCCTTTCAATTCTAGCTCGTGGATGGCTGTGGAGCTGGTAGCTATGGTGTTTCAGCTCTCCATCACAGTGTTTGTTCTTGCCATTTCAGAGGCGGAGAAGCCAATTTGGCCTATGAGACTGTGGATAGTTGGTTATGATCTTGGCTGCATTCTTAGTTTGCTGCTTCTCTATGGACGATATTGGCATCTTTATTTAATGCATGGAGAGCGTGTTGGCCTTTCTGACACCGAGCAGCGGAGGACCAGTCAAGCATCAAGGAGCTTGCATTTGATGAACAAATGCCGAACGTCTCTTGAACTTTTCTTTGCAATATGGTTTGTAATGGGTAATGTTTGGATCGTTGATTCTCGCTTCAGTTCTTTTCAAAGAGCTCCCAAGCTTCATTTGCTATGTGTCTTCCTGTTAGTTTGGAATGCCATCTGCTACTCCTTTCCCTTCATTCTTTTTCTGTTGCTATGTTGTTGTGTGCCATTGGTTAGTAGCCTTCTAGGATACAACATTAGCATGGCATCAACCGACAAAGCAGCATTAGATGATCAAATATCTCAGCTACCGTGCTGGCGATATAAAGTGAGCTCAATGCAACCTGATAGTAACGAGGGACTTCCTAAAGAGGATCCAGAATGTTGCATTTGCCTTGTCAAGTACAGAGATGAAGAAGAAGTAAGGCAGTTACCTTGTTCCCATTTCTTCCATCTCAGGTGTGTGGATAAGTGGCTTTCAATCACATCTTCCTGCCCTCTCTGTAAACAACAACTTTAA 1011 42.83 MINSVYFVSGSSCNCGGGTSLFIPNSLLEEDEPVVDVRDDNSVALPASFWVRLAMRVSRARWFIFLRRVFHYQNGSRSNLGSDPFNSSSWMAVELVAMVFQLSITVFVLAISEAEKPIWPMRLWIVGYDLGCILSLLLLYGRYWHLYLMHGERVGLSDTEQRRTSQASRSLHLMNKCRTSLELFFAIWFVMGNVWIVDSRFSSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLVSSLLGYNISMASTDKAALDDQISQLPCWRYKVSSMQPDSNEGLPKEDPECCICLVKYRDEEEVRQLPCSHFFHLRCVDKWLSITSSCPLCKQQL* 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12919080 12921906 - CsaV3_7G023870.1 Csa07g01298 536861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01298 336 SMART ring_2 292 332 IPR001841 -
Csa07g01298 336 Pfam Ring finger domain 291 333 IPR001841 -
Csa07g01298 336 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 30 336 - -
Csa07g01298 336 SUPERFAMILY RING/U-box 285 335 - -
Csa07g01298 336 ProSiteProfiles Zinc finger RING-type profile. 292 333 IPR001841 -
Csa07g01298 336 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 30 336 - -
Csa07g01298 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 336 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02343 Csa-Chr2:20813038 Csa07g01298 Csa-Chr7:12919080 5.50E-30 dispersed
Csa07g01298 Csa-Chr7:12919080 Csa02g01594 Csa-Chr2:15091034 4.86E-12 dispersed
Csa07g01298 Csa-Chr7:12919080 Csa07g01299 Csa-Chr7:12923650 2.64E-166 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01298 - - csv:101219675 642.884