Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01299 ATGGCTGATGATATCAGAAACGAAGCATCTGATTCTGTCCCCCCTTCCTTTTGGGTTAAAATGGCGATGAAAATATCTAGAGCTAGATGGTTTATTTTTTTGAGAAGAGTTTTCCACTACCAAAACGGATCGAGGTCTGATCTTGGGCCTAATCCTTTCAATTCGGGTTCGTGGATGGCGATGGAACTTGTAGCTTTGTTGTTTCAGCTAATTATCTCGGCGTTTACCCTTGCCATTTCACAGGCTGAAAAGCCAGTTTGGCCTATGAGGTTGTGGATAGGTGGTTATGATCTCGGCTGTGTTCTTAGCTTATTGCTTCTCTATGGCCGCCATCGGTATCATTATCTAATGCAGAGAGATGGTAACAGTCTTTCAGATATTGAACACGAACAGCAAAGGACCAATGAATCATCAAGGTATTCACATTTGATGAACCGATGCCGCACGTCTCTCGATCTTTTCTTTGCGATATGGTTTGTAATGGGCAATCTTTGGGCCTTCGATTCTCGCTTAGCCTCGTTCCAGAGAGCTCCCAAGCTACATCTACTATGCAGCTTCCTGCTAGTTTGGAATGCCATCTGCTACTCTTTCCCATTTATTCTGTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCCTTACAGGGTATAACATTAACACGGGATCAACTGAAAAAGGAGCATCAGACGATCAAATTTCCCAGCTACCTTGCTGGAGATACAAAGCAGTTGAAGCCAACATCAACCCCAGAAGTCAACTCGACAATAGCAATACAGGACTTCTAAAAGAGGATCCAGAATGTTGCATTTGCCTTGCCAAGTATATAGACAAGGAAGAAGTGAGACAGTTACCTTGTTCCCATGTGTTTCATCTCAGGTGTGTAGATAAGTGGCTTGCTATTACATCTTCATGCCCTCTCTGTAAGCAACAACTTCAAAGATAG 948 43.14 MADDIRNEASDSVPPSFWVKMAMKISRARWFIFLRRVFHYQNGSRSDLGPNPFNSGSWMAMELVALLFQLIISAFTLAISQAEKPVWPMRLWIGGYDLGCVLSLLLLYGRHRYHYLMQRDGNSLSDIEHEQQRTNESSRYSHLMNRCRTSLDLFFAIWFVMGNLWAFDSRLASFQRAPKLHLLCSFLLVWNAICYSFPFILFLLLCCCVPLISSLTGYNINTGSTEKGASDDQISQLPCWRYKAVEANINPRSQLDNSNTGLLKEDPECCICLAKYIDKEEVRQLPCSHVFHLRCVDKWLAITSSCPLCKQQLQR* 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12923650 12926449 - CsaV3_7G023880.1 Csa07g01299 536862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01299 315 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 6 314 - -
Csa07g01299 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 314 IPR013083 -
Csa07g01299 315 ProSiteProfiles Zinc finger RING-type profile. 269 310 IPR001841 -
Csa07g01299 315 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 314 - -
Csa07g01299 315 SUPERFAMILY RING/U-box 262 313 - -
Csa07g01299 315 SMART ring_2 269 309 IPR001841 -
Csa07g01299 315 Pfam Ring finger domain 268 310 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01999 Csa-Chr5:23276245 Csa07g01299 Csa-Chr7:12923650 5.85E-32 dispersed
Csa07g01299 Csa-Chr7:12923650 Csa06g00229 Csa-Chr6:1576669 2.10E-12 dispersed
Csa07g01298 Csa-Chr7:12919080 Csa07g01299 Csa-Chr7:12923650 2.64E-166 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01299 - - csv:101217150 629.787