Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01329 ATGGAACCTGAAGATAGTTTGTGTAGTTCTGAAGTTTGGACAAAATCTTCTTCTTTTCCTAATGGTAATGTTCAGCAACCTCCACAAAAATGGCCAGATACTTCCATTTTAGACTATGCTATGGATCAACCTTTTCAAGAATTTCAAGAACAGACCGAATCGAAGGCCTCCCTAACCTGTAACCCGAATCAACAAATTGAAATCCTAGATAAAGATAGTAATCAGATGAATGCAGCACTTCTAGCCAGTAAAATTCAAGATTGGGACCCAAGGGCCATGCTAAATAATCTTTCTTTCCTTGAGCAGAAGATTCATCAGCTTCAGGAACTCGTGCATTTGATCGTTGGTCGAAGAGGCCAGGTCTTTGGGAGGCCAGATGAACTCGTAGTTCAGCAACAACAGCTGATAACTGCAGATCTAACTTCAATTATTGTTCAGTTAATCTCCACTGCGGGTAGTCTGCTTCCATCTGTAAAGCATAACTTGTCTGCTGCTGTTCCTCCAGTCGGGCAGCTGGAGCCGTTTGACAAGGTTATTTTCGCATCTGGACCCGGGACCAATGGTGGTGTTCAGTCACAACATGGTGATGGAACTAAACTCCCCGAGCTTCCAACCCAAGTGGACGGAAGTAGCAAGTGTGGGAAGGAACAGAACATGACTGTTGAAGAACACGAATCAAAGGACGAAGAAGATGCAGATGAACACGAGAACCTACCACCCGGTTCATATGAAATATTGCAGCTAGAAAAAGAAGAGATTCTAGCTCCTCACACCCACTTCTGTGCAATATGTGGAAAAGGGTTCAAGAGAGATGCAAATTTACGGATGCACATGAGGGGCCATGGTGATGAGTATAAAACCGCAGCTGCTCTTGCAAAGCCGAACAAAGAATTGGGTTCCGAGACCATGCTAATTAAGAGGTATTCCTGCCCCTTTACCGGCTGCAAGCGGAACAAGGATCACAAGAAGTTTCAACCTTTGAAAACTATTCTGTGTGTTAAAAACCATTACAAGAGAACTCACTGTGATAAAAGCTTCACTTGCAGCAAATGCAACTCTAAGAAATTCTCAGTAATTGCTGATCTCAAAACACATGAGAAGCATTGTGGGAAAGATAAGTGGCTTTGTTCTTGTGGGACTACTTTCTCAAGGAAAGACAAGCTCTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCTCTCGACGAGTCGAAGGGAGCCACCGTGTCCTGTGATCGAGGAGAACGCTATGAAACAACGAATAAGCTTGGGAGTATAAATTTCAGTTTTGGGTCGATTGCTTCTGGAGGAAGCTCAGTTGAAACCATAGCAGATGCAAAAGGTGGTGTTGATGATCCTCTTAGTTATTTCTCACCTTTGAACTTCGATTCGTGTAATTTTGGTGGCTTTCATGAGTTTCCTCGACCGCCATTCGAGAACACAGACAATGCATTTTCGTTCCTTATCCCTGGATCTGGCAATTACACCCAAAAATCTGGTGCAGAATCAAGCTCTAATAACCTTGAATGA 1539 43.53 MEPEDSLCSSEVWTKSSSFPNGNVQQPPQKWPDTSILDYAMDQPFQEFQEQTESKASLTCNPNQQIEILDKDSNQMNAALLASKIQDWDPRAMLNNLSFLEQKIHQLQELVHLIVGRRGQVFGRPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNLSAAVPPVGQLEPFDKVIFASGPGTNGGVQSQHGDGTKLPELPTQVDGSSKCGKEQNMTVEEHESKDEEDADEHENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKELGSETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKGATVSCDRGERYETTNKLGSINFSFGSIASGGSSVETIADAKGGVDDPLSYFSPLNFDSCNFGGFHEFPRPPFENTDNAFSFLIPGSGNYTQKSGAESSSNNLE* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13185682 13188559 + CsaV3_7G024180.1 Csa07g01329 536892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01329 512 MobiDBLite consensus disorder prediction 9 32 - -
Csa07g01329 512 MobiDBLite consensus disorder prediction 217 238 - -
Csa07g01329 512 SUPERFAMILY beta-beta-alpha zinc fingers 257 285 IPR036236 -
Csa07g01329 512 SMART c2h2final6 259 281 IPR013087 -
Csa07g01329 512 SMART c2h2final6 308 341 IPR013087 -
Csa07g01329 512 SMART c2h2final6 346 368 IPR013087 -
Csa07g01329 512 Gene3D Classic Zinc Finger 243 314 - -
Csa07g01329 512 MobiDBLite consensus disorder prediction 183 239 - -
Csa07g01329 512 MobiDBLite consensus disorder prediction 1 33 - -
Csa07g01329 512 ProSitePatterns Zinc finger C2H2 type domain signature. 261 281 IPR013087 -
Csa07g01329 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 286 IPR013087 -
Csa07g01329 512 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 495 - -
Csa07g01329 512 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 495 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01399 Csa-Chr1:9587280 Csa07g01329 Csa-Chr7:13185682 2.45E-46 dispersed
Csa06g03152 Csa-Chr6:26881169 Csa07g01329 Csa-Chr7:13185682 2.35E-78 dispersed
Csa07g01329 Csa-Chr7:13185682 Csa02g02036 Csa-Chr2:18764907 5.22E-26 dispersed
Csa07g01329 Csa-Chr7:13185682 Csa07g02025 Csa-Chr7:19726107 2.25E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32322 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01329 - - csv:101220745 1048.5