Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01336 ATGGGATTCAGAACCATTACCAAACTTACATTCTCTTCCTCCATCCTTCATTCCTCTTCCGCCTTACAAATCAGACCGCTGGGGAATCTCACTTCCACACGTTCCCGGAGCCGTCATCGCCGGCCTCCCATGGCCGCCGCCGCCGCTAACCCGTCATCCACCTCCTCATCCTCCTCCAACCCTTTTATTTTCTCCCCCGATTCTCCCCCTACACTTCTTCTCACACCCCATCAGATTAAGCTTTGTTCCCAAGCTCTTGAGGCCTTCACGGACAAGCTCCAGAAGCCTGATGTCATCAACCAGGAGTTCGCACGATTGCAGGCCAAGAGAATAACTGCATCTGGTATGGGGAGAAGATGCTCTGTGGCACTTGACAAAGTCAACGTATATAAAAATCGTTACATGGATGTATTACCCTTTGATGAGACTAGAGTTGTACTTGACTCATGTAAGGATTACAGACCTTCTGCAAGGGGTTATATCAATGCTAGCTTTATTTCGACTTCCTCCTCAAAAAGCCTTTCTAAGTTTATTGCCACTCAAGGTCCGTTACCACACACTTACGAGGATTTCTGGGAGATGGTATTTCAGTATAAATGCCCTGCAATCTTGATGCTTACTCGTCTTGTTGATAATTACAAGATCGATAAGTGTGGAGATTATTTTCAGGCAGAAGATGGTCCTAGAGATTTTGGTAATCTAATTGTTGTCTCTAAATGGATAAAATCTTCCAACTCCTCTCTTATACTGCGCCATTTGGAGGTGATCCATAAAGAGTCGGAAGAATCTGTGGCTGTTCTACATATTCAGTACCCACAATGGTCTGACCATGGAGTTCCTAATGACACACTTGCTGTTCGTGAAATGTTGAAGAGGCTGTATCATTTACCTCCTGATCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGAAGAACCGGAACATATTGCGCAATTCATAACACAATTCAGAGAATCCTTATTGGAGACATGTCTGCTTTAGATCTTGTCAGTACCATTTCTTCATTTAGGTCCCAGCGAATTGGAATGGTTCAAACACTGGATCAATACTTTTTCTGCTATAGAACTATTGTTGATGAACTAGAAGACCTTATAGCTGTTCCACAGTAG 1134 44.18 MGFRTITKLTFSSSILHSSSALQIRPLGNLTSTRSRSRHRRPPMAAAAANPSSTSSSSSNPFIFSPDSPPTLLLTPHQIKLCSQALEAFTDKLQKPDVINQEFARLQAKRITASGMGRRCSVALDKVNVYKNRYMDVLPFDETRVVLDSCKDYRPSARGYINASFISTSSSKSLSKFIATQGPLPHTYEDFWEMVFQYKCPAILMLTRLVDNYKIDKCGDYFQAEDGPRDFGNLIVVSKWIKSSNSSLILRHLEVIHKESEESVAVLHIQYPQWSDHGVPNDTLAVREMLKRLYHLPPDLGPIVVHCSAGIGRTGTYCAIHNTIQRILIGDMSALDLVSTISSFRSQRIGMVQTLDQYFFCYRTIVDELEDLIAVPQ* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13247376 13257511 - CsaV3_7G024250.1 Csa07g01336 536899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01336 377 ProSitePatterns Tyrosine specific protein phosphatases active site. 305 315 IPR016130 GO:0016311|GO:0016791
Csa07g01336 377 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 48 374 - -
Csa07g01336 377 PRINTS Protein tyrosine phosphatase signature 159 166 IPR000242 GO:0004725|GO:0006470
Csa07g01336 377 PRINTS Protein tyrosine phosphatase signature 177 197 IPR000242 GO:0004725|GO:0006470
Csa07g01336 377 PRINTS Protein tyrosine phosphatase signature 264 281 IPR000242 GO:0004725|GO:0006470
Csa07g01336 377 PRINTS Protein tyrosine phosphatase signature 302 320 IPR000242 GO:0004725|GO:0006470
Csa07g01336 377 PRINTS Protein tyrosine phosphatase signature 335 350 IPR000242 GO:0004725|GO:0006470
Csa07g01336 377 PRINTS Protein tyrosine phosphatase signature 351 361 IPR000242 GO:0004725|GO:0006470
Csa07g01336 377 SMART ptp_7 265 367 IPR003595 -
Csa07g01336 377 CDD PTPc_plant_PTP1 160 362 - -
Csa07g01336 377 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 80 369 IPR029021 -
Csa07g01336 377 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 284 359 IPR000387 GO:0016311|GO:0016791
Csa07g01336 377 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 48 374 - -
Csa07g01336 377 MobiDBLite consensus disorder prediction 27 61 - -
Csa07g01336 377 Gene3D Protein tyrosine phosphatase superfamily 74 373 IPR029021 -
Csa07g01336 377 ProSiteProfiles PTP type protein phosphatase domain profile. 99 368 IPR000242 GO:0004725|GO:0006470
Csa07g01336 377 Pfam Protein-tyrosine phosphatase 128 366 IPR000242 GO:0004725|GO:0006470
Csa07g01336 377 SMART PTPc_3 98 370 IPR000242 GO:0004725|GO:0006470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01336 - - csv:101220033 675.241