Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01387 ATGGCATTCAGTTCCGCTGTAGCATCGCATCTTCATGCTTTCCGAACCTTCAATCTCCGATTGCCTGACTCCAACAAATCATGCAGCCGGAGGCGGCGAACCACTGTGGTTCCTGTAATCCGGTGCGACAAGGTCGTGGGAATCGATCTAGGAACGACGAACTCGGCGGTGGCGGCAATGGAGGGAGGGCAGCCGACTATTGTAACGAACGCCGAGGGACAGAGGACGACGCCGTCGGTAGTGGCGTATACGAAGAGCGGGGATCGGCTTGTTGGCCAGTTGGCGAAACGGCAGGCCGTGGTTAATCCGGAGAATACTTTCTTCTCTGTGAAGAGGTTTATTGGAAGGAAAATGGTGGAGGTGGATGAAGAAGCGAAGCAAGTTTCTTACAAGGTTATCGCCGACGAGAATGGAAATGTAAAGCTCGATTGCCCTGCCGTCGGTAAGCAGTTCGCCGCCGAGGAGATTTCGGCTCAGGTTTTAAGAAAGCTGGTGGATGATGCATCCAAGTTCTTGAATGATCAAGTAGGAAAAGCAGTTGTAACAGTACCAGCATATTTCAATGACTCTCAAAGGACGGCGACGAAAGATGCTGGTCGGATTGCTGGTCTTGAAGTTCTTCGCATCATCAATGAACCAACTGCTGCTTCCCTTGCTTATGGTTTTGACAAGAAAACCAACGAGACCATTCTCGTTTTCGACCTTGGCGGTGGAACGTTTGATGTCTCAGTCCTCGAGGTTGGAGATGGTGTATTTGAGGTTCTTTCTACTTCAGGCGATACACATTTGGGTGGTGACGATTTTGACAAGAGAATTGTCGATTGGCTTGCCGAGAGCTTTAAGAGGGATGAAGGAATTGACCTTTTGAAAGATAAACAGGCCCTGCAACGTCTAACCGAAACTGCTGAGAAGGCAAAGATTGAGCTATCATCTCTAACACAAACGAATATTAGTTTACCATTTATCACTGCAACCAACGACGGCCCAAAACATATTGATACTACACTTACTAGGGTTAAGTTTGAAGAATTGTGTTCAGACTTGCTAGATAGGTTGCGATCACCAGTGGAAACGGCTTTAAAGGATGCACAGTTGTCGTTCAAAAATATAGATGAAGTCATTCTTGTTGGTGGCTCAACTCGTATCCCAGCAGTTCAGGAGCTTGTCAAGAAAATGACAGGGAAAGATCCAAATATGACTGTAAATCCCGACGAAGTGGTGGCTCTTGGGGCGGCAGTTCAGGCTGGTGTTCTGGCTGGAGATGTCAGTGACATTGTCCTCTTGGATGTCACACCTCTCTCTCTTGGTTTGGAAACGTTGGGTGGAGTGATGACCAAAATCATTCCAAGGAACACGACCTTACCCACATCCAAATCAGAGGTGTTTTCAACGGCAGCAGATGGACAAACAAGTGTTGAAATTAATGTATGTCAAGGTGAACGGGAGTTTGTTCGAGACAACAAGTCTCTCGGGCGGTTTCTCTTGGATGGTATCCCTCCTGCACCTCGCGGTGTTCCTCAGATTGAAGTGAAATTTGACATTGATGCTAATGGTATTCTCTCAGTCACTGCCATTGACAAGGGAACCGGGAAGAAGCAGGACATCACAATTACTGGCGCTAGCACTTTACCAAGTGATGAGGTGGATAGAATGGTTAAAGAAGCAGAGAAGTTCGCAAAAGAAGATAAGGAAAAAAGGGATGCGATAGACACAAAGAACCAAGCAGATTCTGTTGTGTACCAGACTGAAAAACAGCTAAAGGAGCTGGGAGACAAAATTCCCTCATCAGTACGAGATACCGTAGAAGCTAAGCTAAAAGAACTTAAGGATGCCATCTCTAATGGGTCGATCGAAACTATAAAAGTTGCCATGGCTGCACTGAATCAAGAAGTAATGCAGATGGGGCAGTCCCTCTACAGCCAAGCAACAGCCTCTAGTGCTGGAACTGCATCCAGAACACAGTCTACTTCATCGGGTTCATCCGGAGAAACTGATGGGGATGTCGTTGATGCAGATTTTGTTGATAGTGAGTGA 2034 46.9 MAFSSAVASHLHAFRTFNLRLPDSNKSCSRRRRTTVVPVIRCDKVVGIDLGTTNSAVAAMEGGQPTIVTNAEGQRTTPSVVAYTKSGDRLVGQLAKRQAVVNPENTFFSVKRFIGRKMVEVDEEAKQVSYKVIADENGNVKLDCPAVGKQFAAEEISAQVLRKLVDDASKFLNDQVGKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFDKKTNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAESFKRDEGIDLLKDKQALQRLTETAEKAKIELSSLTQTNISLPFITATNDGPKHIDTTLTRVKFEELCSDLLDRLRSPVETALKDAQLSFKNIDEVILVGGSTRIPAVQELVKKMTGKDPNMTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVCQGEREFVRDNKSLGRFLLDGIPPAPRGVPQIEVKFDIDANGILSVTAIDKGTGKKQDITITGASTLPSDEVDRMVKEAEKFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKIPSSVRDTVEAKLKELKDAISNGSIETIKVAMAALNQEVMQMGQSLYSQATASSAGTASRTQSTSSGSSGETDGDVVDADFVDSE* 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14011638 14016863 + CsaV3_7G024760.1 Csa07g01387 536950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01387 677 ProSitePatterns Heat shock hsp70 proteins family signature 2. 232 245 IPR018181 -
Csa07g01387 677 Pfam Hsp70 protein 45 639 IPR013126 GO:0005524|GO:0140662
Csa07g01387 677 MobiDBLite consensus disorder prediction 639 677 - -
Csa07g01387 677 Gene3D Actin; Chain A, domain 4 265 352 - -
Csa07g01387 677 Hamap Chaperone protein DnaK [dnaK]. 42 676 IPR012725 GO:0005524|GO:0006457|GO:0051082
Csa07g01387 677 Gene3D - 221 402 - -
Csa07g01387 677 MobiDBLite consensus disorder prediction 639 664 - -
Csa07g01387 677 PANTHER STROMAL 70 KDA HEAT SHOCK-RELATED PROTEIN, CHLOROPLASTIC-LIKE 36 653 - -
Csa07g01387 677 ProSitePatterns Heat shock hsp70 proteins family signature 1. 48 55 IPR018181 -
Csa07g01387 677 ProSitePatterns Heat shock hsp70 proteins family signature 3. 373 387 IPR018181 -
Csa07g01387 677 Coils Coil 288 315 - -
Csa07g01387 677 Gene3D - 46 415 - -
Csa07g01387 677 Gene3D - 543 643 IPR029048 -
Csa07g01387 677 PANTHER HEAT SHOCK PROTEIN 70KDA 36 653 IPR013126 GO:0005524|GO:0140662
Csa07g01387 677 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 420 576 IPR029047 -
Csa07g01387 677 CDD HSPA9-Ssq1-like_NBD 44 418 - -
Csa07g01387 677 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 416 541 IPR029047 -
Csa07g01387 677 PRINTS 70kDa heat shock protein signature 44 57 - -
Csa07g01387 677 PRINTS 70kDa heat shock protein signature 72 84 - -
Csa07g01387 677 PRINTS 70kDa heat shock protein signature 95 103 - -
Csa07g01387 677 PRINTS 70kDa heat shock protein signature 179 199 - -
Csa07g01387 677 PRINTS 70kDa heat shock protein signature 238 248 - -
Csa07g01387 677 PRINTS 70kDa heat shock protein signature 370 386 - -
Csa07g01387 677 PRINTS 70kDa heat shock protein signature 401 421 - -
Csa07g01387 677 PRINTS 70kDa heat shock protein signature 424 443 - -
Csa07g01387 677 PRINTS 70kDa heat shock protein signature 505 521 - -
Csa07g01387 677 TIGRFAM prok_dnaK: chaperone protein DnaK 44 639 IPR012725 GO:0005524|GO:0006457|GO:0051082
Csa07g01387 677 SUPERFAMILY Actin-like ATPase domain 227 418 IPR043129 -
Csa07g01387 677 SUPERFAMILY Actin-like ATPase domain 44 224 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00905 Csa-Chr2:8444104 Csa07g01387 Csa-Chr7:14011638 0 dispersed
Csa04g01169 Csa-Chr4:10111427 Csa07g01387 Csa-Chr7:14011638 0 dispersed
Csa04g01885 Csa-Chr4:18631896 Csa07g01387 Csa-Chr7:14011638 6.86E-30 dispersed
Csa05g01826 Csa-Chr5:21611631 Csa07g01387 Csa-Chr7:14011638 1.09E-178 dispersed
Csa07g01387 Csa-Chr7:14011638 Csa03g02245 Csa-Chr3:19766476 4.32E-53 dispersed
Csa07g01387 Csa-Chr7:14011638 Csa05g01833 Csa-Chr5:21670377 1.19E-180 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01387 K03283 - csv:101212307 1229.93