Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01394 ATGGTGATACCAATTTCAGTTTCTGTTTCTGTTTCTGTTTCTGTTTCTGTTTCAATCATTGTGTTCTCCTTGTTGTTACCATCAATTTCTGGTCTCAACCAACAGGGTATCTCTCTGCTTTCATGGCTTTCAACTTTCAATTCATCTTCTTCTGCTACTTTTTTCTCATCTTGGGATTTAACCCATCAGAATCCATGCAGTTGGGATTATGTTCAGTGTTCTGGCGATAGGTTTGTTACCGAAATTGAAATTTCTTCCATTAATCTTCAAACTACCTTTCCCTTGCAGCTTCTTAGCTTCAACTCACTCACTAAACTTGTTTTGTCCAATGCCAATCTCACTGGGGAGATTCCACCAGCAATTGGTAATTTATCATCTTTGATCGTCTTGGATTTGAGTTTCAATGCTTTGACTGGTAAGATTCCGGCGAAGATTGGGGAGATGTCGAAGTTGGAGTTCTTGTCCTTGAATTCCAACTCGTTCAGTGGCGAAATTCCGCCGGAGATTGGGAACTGTTCGATGTTGAAACGGCTCGAACTGTATGATAACTTACTGTTTGGGAAGATTCCCGCCGAATTCGGTAGGTTGGAGGCGTTGGAGATTTTTCGTGCAGGTGGAAATCAAGGCATTCATGGCGAAATTCCGGATGAAATTTCCAAGTGTGAAGAACTCACGTTCCTAGGGCTTGCAGATACTGGCATTTCGGGCCGGATTCCGAGGAGCTTTGGAGGGCTTAAGAATCTGAAAACGCTTTCTGTTTATACTGCGAATCTCAACGGAGAAATCCCGCCGGAAATCGGGAACTGTTCTTTGTTGGAGAATTTATTTTTGTATCAGAATCAACTTTCCGGGAGAATACCGGAGGAGTTGGGGAATATGATGAATATCAGAAGAGTGTTGTTATGGCAGAATAATTTAAGTGGAGAGATTCCAGAATCTCTTGGGAATGGAACAGGGCTTGTAGTTATTGATTTCTCTTTGAATGCTTTGACCGGTGAAGTTCCTGTTTCTTTAGCCAAATTAACTGCTCTTGAGGAGCTGCTTCTGTCTGAGAATGAGATTTCCGGTCACATTCCTTCGTTTTTCGGGAACTTTTCGTTTCTTAAGCAACTTGAATTGGACAACAACAGATTTTCCGGCCAAATTCCGTCGTCCATTGGCCTATTGAAGAAGCTCTCTCTGTTCTTCGCCTGGCAGAATCAACTCACTGGAAACCTACCGGCGGAACTTTCCGGTTGTGAGAAACTCGAAGCACTCGATCTTTCTCATAATTCTCTCACTGGACCGATTCCGGAATCTCTGTTTAATCTCAAGAATTTAAGCCAATTCTTGTTGATATCCAATCGATTTTCAGGTGAAATTCCTCGGAATTTAGGGAATTGCACTGGTCTAACTCGTTTGCGACTCGGATCGAATAACTTCACCGGGAGAATTCCGTCGGAGATTGGGCTTCTTCGTGGTTTGAGTTTTCTAGAGTTGTCGGAAAATCGATTTCAGTCGGAAATTCCGTCGGAGATTGGTAACTGTACTGAGTTGGAAATGGTTGATTTGCATGGAAATGAACTCCATGGAAATATACCTTCGTCCTTCTCTTTTCTTCTAGGACTCAATGTGTTGGACCTCTCCATGAACAGATTAACTGGCGCCATTCCTGAAAATTTAGGCAAGCTTTCATCTCTAAACAAATTGATTCTGAAGGGAAATTTCATTACTGGTTCAATTCCTTCTTCATTAGGTCTTTGTAAAGATTTGCAGTTGTTGGATCTAAGTAGTAATAGAATCTCATATTCAATCCCTTCTGAGATTGGTCACATTCAAGAACTAGACATTCTTTTGAATTTGAGTTCAAATTCTTTGACTGGTCATATCCCTCAAAGCTTTTCAAATCTCTCCAAACTTGCTAATTTGGATATCTCTCATAACATGCTCATTGGAAATCTGGGAATGTTGGGAAATCTTGACAATCTTGTCTCTCTTGATGTCTCATTCAACAACTTCTCAGGTGTTCTTCCTGATACCAAGTTCTTCCAAGGCCTTCCTGCCTCTGCATTTGCTGGAAATCAAAATCTATGTATTGAAAGAAACAGTTGCCACTCCGATCGCAACGATCATGGCAGGAAGACATCTAGAAATCTCATCATTTTCGTGTTTCTTAGTATCATTGCAGCTGCATCCTTTGTACTAATTGTGTTGAGTTTGTTTATAAAAGTACGCGGAACAGGGTTCATCAAGAGCAGCCATGAAGACGACTTGGATTGGGAATTCACTCCATTTCAGAAGTTTAGCTTCTCTGTGAATGATATTATTACAAGATTATCGGACTCAAACATCGTTGGAAAGGGTTGTTCGGGCATAGTTTATCGTGTGGAAACTCCAGCAAAACAAGTCATTGCAGTGAAGAAGCTATGGCCTTTAAAGAACGGTGAAGTTCCTGAAAGAGATTTGTTTTCAGCTGAAGTTCAGATTCTTGGATCCATAAGACATAGAAATATCGTTAGGCTTCTTGGTTGCTGTAACAATGGCAAAACTAGACTGCTTTTATTTGATTACATAAGTAATGGAAGTTTGGCTGGACTGCTCCATGATAAGAGGCCATTCTTGGATTGGGATGCAAGGTATAAGATTATATTGGGAGCTGCCCATGGTTTGGCTTATCTACACCATGATTGCATACCTCCCATCCTTCATCGTGATATTAAAGCAAACAACATATTAGTAGGATCACAATTCGAAGCTGTTCTTGCTGATTTTGGCCTGGCAAAGCTTGTTGATTCTTCAGGCTGTTCGAGACCTTCCAATGCAGTTGCTGGATCTTACGGCTATATTGCTCCAGAATATGGGTACAGCTTGAGGATAACAGAGAAAAGTGATGTGTACAGTTATGGTGTTGTGCTTCTAGAGGTCTTAACAGGGAAGCCTCCAACAGATAATACAATCCCAGAAGGTGTCCACATTGTCACATGGGTTAACAAAGAACTACGAGATAGAAAGAACGAATTTACAGCAATTCTTGATCCACAATTACTCCAACGGTCAGGAACCCAAATCCAACAGATGCTTCAAGTACTCGGCGTGGCTCTCCTTTGCGTCAATACTTCACCAGAGGATCGACCGACAATGAAAGATGTTACAGCAATGCTCAAGGAGATCAAGCATGAAAGTGAAGAGTATGAGAAGCCTAATTCGTTGGAAAGAGGAGCTATCACAAATCCAAAAGCTGCAGTTCATTGTTCCAGTTTTTCTAGATCATCTGAGCCTCTAATTAGAGCTGTACCTTCTGCAGTACCATAG 3291 41.29 MVIPISVSVSVSVSVSVSIIVFSLLLPSISGLNQQGISLLSWLSTFNSSSSATFFSSWDLTHQNPCSWDYVQCSGDRFVTEIEISSINLQTTFPLQLLSFNSLTKLVLSNANLTGEIPPAIGNLSSLIVLDLSFNALTGKIPAKIGEMSKLEFLSLNSNSFSGEIPPEIGNCSMLKRLELYDNLLFGKIPAEFGRLEALEIFRAGGNQGIHGEIPDEISKCEELTFLGLADTGISGRIPRSFGGLKNLKTLSVYTANLNGEIPPEIGNCSLLENLFLYQNQLSGRIPEELGNMMNIRRVLLWQNNLSGEIPESLGNGTGLVVIDFSLNALTGEVPVSLAKLTALEELLLSENEISGHIPSFFGNFSFLKQLELDNNRFSGQIPSSIGLLKKLSLFFAWQNQLTGNLPAELSGCEKLEALDLSHNSLTGPIPESLFNLKNLSQFLLISNRFSGEIPRNLGNCTGLTRLRLGSNNFTGRIPSEIGLLRGLSFLELSENRFQSEIPSEIGNCTELEMVDLHGNELHGNIPSSFSFLLGLNVLDLSMNRLTGAIPENLGKLSSLNKLILKGNFITGSIPSSLGLCKDLQLLDLSSNRISYSIPSEIGHIQELDILLNLSSNSLTGHIPQSFSNLSKLANLDISHNMLIGNLGMLGNLDNLVSLDVSFNNFSGVLPDTKFFQGLPASAFAGNQNLCIERNSCHSDRNDHGRKTSRNLIIFVFLSIIAAASFVLIVLSLFIKVRGTGFIKSSHEDDLDWEFTPFQKFSFSVNDIITRLSDSNIVGKGCSGIVYRVETPAKQVIAVKKLWPLKNGEVPERDLFSAEVQILGSIRHRNIVRLLGCCNNGKTRLLLFDYISNGSLAGLLHDKRPFLDWDARYKIILGAAHGLAYLHHDCIPPILHRDIKANNILVGSQFEAVLADFGLAKLVDSSGCSRPSNAVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEVLTGKPPTDNTIPEGVHIVTWVNKELRDRKNEFTAILDPQLLQRSGTQIQQMLQVLGVALLCVNTSPEDRPTMKDVTAMLKEIKHESEEYEKPNSLERGAITNPKAAVHCSSFSRSSEPLIRAVPSAVP* 1097
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14158985 14166594 + CsaV3_7G024830.1 Csa07g01394 536957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01394 1096 Pfam Leucine rich repeat 536 594 IPR001611 GO:0005515
Csa07g01394 1096 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Csa07g01394 1096 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 13 1068 - -
Csa07g01394 1096 Gene3D Ribonuclease Inhibitor 413 700 IPR032675 -
Csa07g01394 1096 Gene3D Ribonuclease Inhibitor 248 412 IPR032675 -
Csa07g01394 1096 Pfam Leucine Rich Repeat 415 437 IPR001611 GO:0005515
Csa07g01394 1096 Pfam Leucine Rich Repeat 612 630 IPR001611 GO:0005515
Csa07g01394 1096 PRINTS Leucine-rich repeat signature 416 429 - -
Csa07g01394 1096 PRINTS Leucine-rich repeat signature 630 643 - -
Csa07g01394 1096 ProSitePatterns Serine/Threonine protein kinases active-site signature. 894 906 IPR008271 GO:0004672|GO:0006468
Csa07g01394 1096 Gene3D Transferase(Phosphotransferase) domain 1 851 1072 - -
Csa07g01394 1096 PANTHER LRR RECEPTOR-LIKE KINASE 13 1068 - -
Csa07g01394 1096 ProSitePatterns Protein kinases ATP-binding region signature. 778 806 IPR017441 GO:0005524
Csa07g01394 1096 SUPERFAMILY Protein kinase-like (PK-like) 756 1055 IPR011009 -
Csa07g01394 1096 SUPERFAMILY L domain-like 57 392 - -
Csa07g01394 1096 SUPERFAMILY RNI-like 284 572 - -
Csa07g01394 1096 Gene3D Ribonuclease Inhibitor 37 148 IPR032675 -
Csa07g01394 1096 SMART serkin_6 772 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01394 1096 Pfam Protein kinase domain 775 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01394 1096 ProSiteProfiles Protein kinase domain profile. 772 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01394 1096 Pfam Leucine rich repeat N-terminal domain 33 74 IPR013210 -
Csa07g01394 1096 SUPERFAMILY L domain-like 556 689 - -
Csa07g01394 1096 Gene3D Ribonuclease Inhibitor 149 240 IPR032675 -
Csa07g01394 1096 Gene3D Phosphorylase Kinase; domain 1 743 850 - -
Csa07g01394 1096 SMART LRR_typ_2 124 146 IPR003591 -
Csa07g01394 1096 SMART LRR_typ_2 485 509 IPR003591 -
Csa07g01394 1096 SMART LRR_typ_2 413 437 IPR003591 -
Csa07g01394 1096 SMART LRR_typ_2 245 269 IPR003591 -
Csa07g01394 1096 SMART LRR_typ_2 653 686 IPR003591 -
Csa07g01394 1096 SMART LRR_typ_2 533 557 IPR003591 -
Csa07g01394 1096 SMART LRR_typ_2 148 172 IPR003591 -
Csa07g01394 1096 SMART LRR_typ_2 341 364 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02392 Csa-Chr5:26079359 Csa07g01394 Csa-Chr7:14158985 2.42E-78 dispersed
Csa06g00494 Csa-Chr6:4153606 Csa07g01394 Csa-Chr7:14158985 0 dispersed
Csa06g03207 Csa-Chr6:27169292 Csa07g01394 Csa-Chr7:14158985 5.71E-63 dispersed
Csa07g01065 Csa-Chr7:10186707 Csa07g01394 Csa-Chr7:14158985 0 dispersed
Csa07g01394 Csa-Chr7:14158985 Csa04g00403 Csa-Chr4:2466393 8.07E-41 dispersed
Csa07g01394 Csa-Chr7:14158985 Csa03g01130 Csa-Chr3:8912410 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78492 PF00069 Pkinase 2.90E-42 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01394 - - csv:101210837 2053.48