Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01411 ATGTCGTTAGTGAGGCCGTCCGATCCATCTCCGTTATCATATGGGAGTCGCAAGCTTTACTCATTGAAGGGAACTAATAGTGCTCCTGACTTGTCCACACAAAGATTTGGCTCTGAAAAACATAGAACAATGTATATGAATGATACATATTGCAGCGAGAGCTATGAGAAGTATTTCCTCGACTTCCCAATAGAAGAGCTAGCGATTTCTGGCATTTCTACCAATTCTTGTCACCCCAACGCTTGGGCTGATTCTCTATCCCCCTTGTGTAATTCATTTACACCTTTTGATGCTTGTCAATCAAATTCAGACTCGGCCTGCCTTGAGAGTACAAGTCCAGAAGAGCTTGATTTCGAGGATGATCAAGTGAGACAGAAGTTGCAAGAATTGGAAAGAGACCTGCTGGGTGACCCTGATGCTGCGGATTATGATGTTGAGATGCTTACAAACGGCCAGAGCATGGAAATTGATAGCGAATGGGCGAATTCAATTCAAGATGCACTGCTTCATGACTCGCCAAAGGAATCTTCATCAACAGATTCTAATTTCAGTACCATCAGTAGCAATAAGGATGCATCTCAGTTATCTTCACAGAATCCAAGACAGATGCTTTCAGAATGTGCTTTTGCTATCTCAGAAGAGAACTATGGAGAAGCGTCAGCCATGATAGAACAGCTTCGATGTGTGGTCTCGATTCAGGGAGATCCTTCACAGAGGATTGCTGCATATATGGTGGAAGGTCTTGCTGCTCGGTTGTTGGAATCAGGAAAATGTCTTTATAAAGCTTTGAGATGCAAAGAACCCCCTTCCTCCGACCGTCTCGCTGCTATGCAGATCCTTTTCGAGGTCTGCCCCTGTTTCAAATTTGGCTTTATGGCTGCAAATTGTGCGATTATTGAGGCAGCGAAAGATGAGAAGAAAATTCACATAATCGATTTCGATGTAAGCCAAGGAACTCAGTACATAAAATTAATTCAGATGTTAGCAGCTCAGCCAGGTAAGCCACCACACTTGAGGTTAACAGGGGTTGATGACCCTGAATCCGTACAGCGCCCCGTTGGAGGTCTTAGGCACATTGGACAAAGGCTTGAGCAACTGGCAAAAGCACTACGGGTTCCATTTGAATTTCGAGCAATTGCCTCAAATGCTTCTGAGGTTACGCCCTCAATGCTTGCCTCCAAGCCTGGAGAGGCACTCATAGTGAACTTTGCTTTTCTGCTTCACCACATGCCAGATGAAAGCGTTTCAACCGTAAATCAACGAGACAGGCTTCTCCGAATGGTGAAGAGCTTGAACCCAAAACTGGTAACAGTTGTCGAACAGGACATGAACACAAACACCACCCCATTCTTCTCAAGATTCGTCGAAGCCTATAACTACTATGCAGCTGTTTACGATTCTCTTGATGCAACACTCCCAAGAGATAGTCAAGACAGAATAAATGTAGAAAGTCAATGCTTAGCAAAGGACATAGTCAATATTGTAGCTTGTGAAGGTGAGGAGAGAGTAGAGAGATATGAAGTGGCTGGGAAATGGCGGGCAAGGATGACGATGGCAGGCTTCACTTCTTGTTCGATGAGCCAAAATGTGACCGACCCGATTCGGAAACTTATCGAGGAGTATTGCAACAGATTCAAGATGTATGAGGAAATGGGGACACTTCATTTTGGATGGGAAGAGAAAAGCTTGATTGTTACATCAGCGTGGAGGTAA 1713 44.42 MSLVRPSDPSPLSYGSRKLYSLKGTNSAPDLSTQRFGSEKHRTMYMNDTYCSESYEKYFLDFPIEELAISGISTNSCHPNAWADSLSPLCNSFTPFDACQSNSDSACLESTSPEELDFEDDQVRQKLQELERDLLGDPDAADYDVEMLTNGQSMEIDSEWANSIQDALLHDSPKESSSTDSNFSTISSNKDASQLSSQNPRQMLSECAFAISEENYGEASAMIEQLRCVVSIQGDPSQRIAAYMVEGLAARLLESGKCLYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFMAANCAIIEAAKDEKKIHIIDFDVSQGTQYIKLIQMLAAQPGKPPHLRLTGVDDPESVQRPVGGLRHIGQRLEQLAKALRVPFEFRAIASNASEVTPSMLASKPGEALIVNFAFLLHHMPDESVSTVNQRDRLLRMVKSLNPKLVTVVEQDMNTNTTPFFSRFVEAYNYYAAVYDSLDATLPRDSQDRINVESQCLAKDIVNIVACEGEERVERYEVAGKWRARMTMAGFTSCSMSQNVTDPIRKLIEEYCNRFKMYEEMGTLHFGWEEKSLIVTSAWR* 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14297157 14298869 - CsaV3_7G025000.1 Csa07g01411 536974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01411 570 MobiDBLite consensus disorder prediction 171 199 - -
Csa07g01411 570 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 12 569 IPR030011 GO:0003700|GO:0005634
Csa07g01411 570 ProSiteProfiles GRAS family profile. 191 570 IPR005202 -
Csa07g01411 570 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 12 569 IPR005202 -
Csa07g01411 570 Pfam GRAS domain family 201 570 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02434 Csa-Chr1:21584110 Csa07g01411 Csa-Chr7:14297157 5.15E-69 dispersed
Csa05g00112 Csa-Chr5:556639 Csa07g01411 Csa-Chr7:14297157 3.40E-94 dispersed
Csa06g03453 Csa-Chr6:28391622 Csa07g01411 Csa-Chr7:14297157 5.65E-142 dispersed
Csa07g01411 Csa-Chr7:14297157 Csa06g00941 Csa-Chr6:7561913 4.83E-151 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32324 PF03514 GRAS 6.00E-130 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01411 - - csv:101206511 1138.64