Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01423 ATGGACCCTAATTTCTCGTCGTCGAAGCCACCGCATCCGGTGGCGATGGACATCGAACATATGCCGGAAAATCCTCATCGTGCTTCCCACCACCGCCGCTCCCACTCCGACACTTCCTTTCGCTTCCCAAACCTTGATGAACTTCTCTTCTTTGACCCTTCAGAGCTCGACCTCTCCATGCTCTCTTCTCCTTCTTCTCCCCCTACTGCCGCCACTCCCATCGCCGTTAATTCCTCTAGTGCCAAATTTTCTGATGACGCCGTTCGCCCTAAGCCCGAGCCGATTGCCTCTGGACCTTTTGGTGGTCACTTACGGAGCTTGTCTATGGACTCTGATTTCTTCAAGAATTTGGACCTTGGTGGTGATAGTGGGGAAATCGATTCTTTGGGGAAGAAGACTCCGGTGAGTGAACAACGGCCAGTTCGTCATCGACATAGCTTATCCATGGATGGTTCTTCGTCGTCGTTTGAGGCTGATTCAACCCTAGTAATTGATGGAGTGAAGAAGGCGATGGACCCGGAGAGACTTGCGGAGCTTGCCCTAATTGACCCGAAAAGAGCTAAAAGGATTCTTGCGAACAGACAATCTGCGGCTCGTTCGAAAGAGAGGAAGATACGATACACGAATGAACTGGAGAGAAAGGTTCAGACTCTGCAGTCCGAAGCTACCACTCTGTCTGCGCAGGTGACGATTCTACAGAGAGATACTAGTGGATTAACTGTGGAAAATAAGGAACTCAAACTTCGGTTACAGGCTATGGAGCAACAAGCACAACTTCGAGATGCTCTGAGTGAAGCTTTGAAGGAAGAAGTTCAACGACTTAGAATTGCCGCAGGCCAAGTTGCATCAATCAATGGAAATCCTTTCAACCGACCTCCGCAATATACTTCATCCCGACCACCTGTACACCATTTTAGTAGCTCCCATGCTCAGCAGGGTCAACAGCAGCCACCACCCATGTTGGCTACCAACCAGCAGCAATCAGACCCGAAATGGACAAACTCCTCTCAGCTTCTCAGTCGAAGTCCCGACGGCGAAACAAAGCCTTAG 1050 50.19 MDPNFSSSKPPHPVAMDIEHMPENPHRASHHRRSHSDTSFRFPNLDELLFFDPSELDLSMLSSPSSPPTAATPIAVNSSSAKFSDDAVRPKPEPIASGPFGGHLRSLSMDSDFFKNLDLGGDSGEIDSLGKKTPVSEQRPVRHRHSLSMDGSSSSFEADSTLVIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSAQVTILQRDTSGLTVENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAAGQVASINGNPFNRPPQYTSSRPPVHHFSSSHAQQGQQQPPPMLATNQQQSDPKWTNSSQLLSRSPDGETKP* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14447945 14450621 - CsaV3_7G025120.1 Csa07g01423 536986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01423 349 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 5 328 - -
Csa07g01423 349 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 183 246 IPR004827 GO:0003700|GO:0006355
Csa07g01423 349 MobiDBLite consensus disorder prediction 1 38 - -
Csa07g01423 349 MobiDBLite consensus disorder prediction 283 349 - -
Csa07g01423 349 SUPERFAMILY Leucine zipper domain 185 236 IPR046347 GO:0003700|GO:0006355
Csa07g01423 349 MobiDBLite consensus disorder prediction 124 153 - -
Csa07g01423 349 Coils Coil 236 256 - -
Csa07g01423 349 Gene3D - 184 237 - -
Csa07g01423 349 Coils Coil 208 228 - -
Csa07g01423 349 Pfam bZIP transcription factor 185 232 IPR004827 GO:0003700|GO:0006355
Csa07g01423 349 SMART brlzneu 181 245 IPR004827 GO:0003700|GO:0006355
Csa07g01423 349 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 5 328 - -
Csa07g01423 349 CDD bZIP_plant_RF2 186 235 IPR044759 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01658 Csa-Chr1:12380301 Csa07g01423 Csa-Chr7:14447945 1.25E-52 dispersed
Csa01g01659 Csa-Chr1:12381397 Csa07g01423 Csa-Chr7:14447945 8.48E-06 dispersed
Csa06g00531 Csa-Chr6:4512881 Csa07g01423 Csa-Chr7:14447945 8.48E-06 dispersed
Csa06g01114 Csa-Chr6:9232616 Csa07g01423 Csa-Chr7:14447945 1.49E-57 dispersed
Csa07g00051 Csa-Chr7:573566 Csa07g01423 Csa-Chr7:14447945 2.84E-48 dispersed
Csa07g00052 Csa-Chr7:584738 Csa07g01423 Csa-Chr7:14447945 3.17E-48 dispersed
Csa07g01423 Csa-Chr7:14447945 Csa06g00532 Csa-Chr6:4513114 3.81E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32325 PF00170 bZIP_1 5.90E-08 CL0018 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01423 K20557 - csv:101207973 645.195