Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01427 ATGGGTCGAAAGAAGCCTACCGCAAGGGATGATGACAGCGCCCCTGCGGCAGCCCATGGTGGTGGGAAGTCGAAGAAAAAGACATTTGCAGTAGACGACGATGAGTACTCCATTGGAACCGAGTTGTCTGAAGAAGCGCAAATTCAGGAGGAGAAGGTTGTGATAACTGGGAAGAAGAAGGGTAAGAAGGGAAATTCAAAAGCTTCACAACTTAAGGACGATGATGACGAAGACGATGTGGATGGTGTTTCAGAAATTGTTATTACTGGGAAGAAGAAGGGCAAGTCGAAGAAGGGTGGAAGTAGCAGTGCTTTTTCTTCTTCCAGTTTTGGTTTGCTTGAAGAGGAGGGAATAGATGATGCTGATGATGACGAAGAATCTGTGTTGACTACAGAAAAGGATGATGATGAGGAGGAACATTCTGCGATCAAGTTTTCGGGCAAGAAGAAGTCTTCCAAGTCTTCGAAGAAGAGTGGTTTTTCTGCAGTGTCAGCATTCACTGCCCTTGATGATGACAATGATGAGGATGCGATTGATAACGAGATCAGGGCTGATGAAGATATTGATGGTGAGCCTGTCATTGAATTTACAGGTAAGAAGAAGTCATCAAAAGGTGGCAAGAAGGCTGGAAGTGCATTTTCAGGTTTCAGTGGTCTTGACTATGAGGATGAGGACAGAGATGATAAAAAAGATGAGGAGGATGTTACATCAATTAGCTTCTCTGGTAAGAAAAAGAAGTCCGCTAAGGCTTCAAAGAAGAGTGGAAATTCCTTTAGTGCAGCATTAGCAGATGAGGAAAATGATGGTGATTTTTCTATGTCAGAGACAAATAAATTAGACCATGATGGCGTTAATGAAGACGACCTTAATGTAATTGCTTTCTCTGGTAAGAAAAAGTCCTCTAAGAAGAAAAGCAACAGTACTGTTACTGCATTAAGTGATGAAAATGCGCAGGCAAATGAAGCTAAAGATGTGGTCGTGCCTGAAATACATAATACAGTAAGTAGCAATCTTGATTCTGATTTATCTAATGCCAACAAGACGGAAGCGGTGGCAGAAACTTCAAAAAATAAAAAGAAAAAGAAGAAGAGCGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAGATTCTTGCTGAGCTAGGAGAAGGGCCTGCCATTTCAAAACCAGCAGATCCTCCTCTTTTTTTCCAGGAGGCCAAAGTTGAAAATCCACCTGAGCTTGTAGCTCCTCCTGAAAAGGAAGCTGAAGAAGAAAGCACAGAATCAGCTGCAGCAAGGAAGAAGAAAAAGAAGAAGGAGAAGGAAAAAGAAAAAAAGGCGGCAGCTGCTGCAGCTGCTGCTGAAGGGAGTGATGAAAAAGTTGAGGAGGTAAAGTCTGAAATCATAGAACCCAAAAAAGGTGCTGCGAAGAGTAAAGTGCCAGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAGGAAGCAATGGCTAGAAGAAAAGAAGAGGAAGAGCGAAGGAAAAGGGAGGAAGAAGAGAGATTGAAAAAAGAAGAAGAGGAGAGACTTAGGCTAGAAGAACTTGAAAGGCAAGCTGAAGAGGCTAAGCGTAGGAAAAAGGAAAGAGAAAAAGAGAAGCTTTTAAGGAAGAAACTGGAAGGCAAGCTGTTAACAGGTAAACAAAAGGAAGAACAACGGAGGTTGGAAGCAATGAGGAACCAGATATTGTCAAATGCAGGAGGTTTACCTCTGTCTACATCTGATCCCAGTGCACCAGCTAAACGACCCAAATACCAGACAAAGAAGACAAAACCATCCCATCATCAAACAAATGGCAATGCACAAACTAAGGTAGTAGAACATATAGTAGAAAAAATACAAGAAAAAGATGTGGCAGAGACAGAAGTATTGGAGTCGGAGAAGATTGAAGCTGTTGAGTTGATGCATGTGGAGGAAAAGTCAGGGGTTCTTGAGGCTACTGAAGATAATGAAATTCAAGAAGACGAGGATGAGGATGAATGGGATGCAAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCCTTCGCTGACGAGGAGCTCGAATCCGAACCTGAGAATGACATGAAAAAGGATAGAAAGAATGGCGCAGGTGCCAAGCTAGCTGCTCCTTCTCAAAAAGGTTTACCTTCTCAGTCTATAAAGTCTCAAGATATTGAAAACAAAAAGAAGCAGGACGGAGTTGAGGTTGCTGACAAGGGCAAAAGGAAAGAGGATGCTGTTAGGAAAAAAGCTTCAATTTCAGATGCTACTCCTGTACAACAGGAAGAAAATCTTCGCTCACCCATCTGTTGTATTATGGGTCATGTTGATACTGGTAAAACTAAGCTACTAGATTGTATCCGTGGCACAAATGTTCAAGAAGGAGAAGCGGGAGGAATTACTCAGCAGATTGGGGCAACCTATTTTCCTGCTGAGAACATTCGGGAAAGAACTAGGGAACTGAAAGCTGATGCAAAGCTGAAGGTTCCTGGCCTACTTATTATTGATACGCCTGGGCACGAGTCGTTTACGAACTTACGTTCTCGTGGTTCAGGCTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAACACAGAATTTATTGTTGCTTTGAATAAGGTTGACAGACTTTATGGGTGGAAATCAATCCGCAATGCACCAATACTCAAGACAATGAAGCAGCAAACTAAGGATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGATTATTACTCAATTTAAAGAGCAGGGATTGAATACCGAGCTGTATTATAAAAATAAAGAAATGGGGGAAACTTTCAGTATAGTACCTACAAGTGCTGTCACTGGTGAAGGTATTCCAGATATGTTACTATTATTGGTGCAGTGGGCCCAGAAAACTATGACGAAGAAACTTACATATAGTGATGAAGTGCAGTGCACGGTCTTGGAGGTCAAAGTTGTTGAAGGTCATGGAACAACTATTGATGTCATACTGGTTAATGGTGTGCTGCATGAAGGAGATCAAATCGTTGTTTGTGGGATGCAGGGCCCAATTGTTACTTCTATTCGAGCCCTATTGACGCCCCATCCAATGAAGGAACTTCGGGTGAAGGGAACATATCTGCATCACAAGGAAATCAAGGCTGCTCAGGGGATAAAAATAACTGGACAGGGTCTTGAGCATGCCATTGCTGGAACCAGTCTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATTAAGGATTCAGCTATGGAAGATATGAAATCGGTTTTGAGCAGGATAGACAAGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGCTCCTTGGAAGCATTATTGGAGTTTTTGAAGTCCCCGGCAGTGAGCATTCCTGTCAGTGGAATAAGTATAGGACCAGTGCATAAAAAAGATGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTAACTCCAGAAGCTCGAGAACTTGCCGATGAGCTTGGTGTGAAGATCTTTATTGCTGATATCATTTATCACTTGTTCGACCAATTCAAGGCCTATATTGATAATCTCAAGGAGGAAAAGAAGAAAGAAGCCGCTGAGGAAGCAGTCTTTCCTTGTGTTCTCAAAATTTTACCAAATTGCATTTTCAACAAAAAGGATCCAATTGTGTTGGGGGTCGATGTGATTGAAGGCATTGCCAAGGTTGGCACACCAATTTGTATTCCTCAAAGAGAATTTATTGACATTGGTCGTATTGCATCTATTGAAAATAATCACAAACCTGTTGATTATGCAAAAAAAGGGCAGAAGATTGCGATTAAGATAGTTGGGCATTCCTCGGAGGAGCAGCAAAAGATGTATGGTAGGCATTTTGATTTGGAGGATGAACTTGTGAGCCATATATCAAGGAAGTCCATTGACCTTCTCAAAGCCAATTATCGGGATGATTTGTCCACGGATGAGTGGAGACTTGTGGTGAAATTGAAGAATCTTTTCAAGATACAATGA 4083 41.71 MGRKKPTARDDDSAPAAAHGGGKSKKKTFAVDDDEYSIGTELSEEAQIQEEKVVITGKKKGKKGNSKASQLKDDDDEDDVDGVSEIVITGKKKGKSKKGGSSSAFSSSSFGLLEEEGIDDADDDEESVLTTEKDDDEEEHSAIKFSGKKKSSKSSKKSGFSAVSAFTALDDDNDEDAIDNEIRADEDIDGEPVIEFTGKKKSSKGGKKAGSAFSGFSGLDYEDEDRDDKKDEEDVTSISFSGKKKKSAKASKKSGNSFSAALADEENDGDFSMSETNKLDHDGVNEDDLNVIAFSGKKKSSKKKSNSTVTALSDENAQANEAKDVVVPEIHNTVSSNLDSDLSNANKTEAVAETSKNKKKKKKSGRTAQEEDDLDKILAELGEGPAISKPADPPLFFQEAKVENPPELVAPPEKEAEEESTESAAARKKKKKKEKEKEKKAAAAAAAAEGSDEKVEEVKSEIIEPKKGAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERLKKEEEERLRLEELERQAEEAKRRKKEREKEKLLRKKLEGKLLTGKQKEEQRRLEAMRNQILSNAGGLPLSTSDPSAPAKRPKYQTKKTKPSHHQTNGNAQTKVVEHIVEKIQEKDVAETEVLESEKIEAVELMHVEEKSGVLEATEDNEIQEDEDEDEWDAKSWDDAVVDLSLKSSFADEELESEPENDMKKDRKNGAGAKLAAPSQKGLPSQSIKSQDIENKKKQDGVEVADKGKRKEDAVRKKASISDATPVQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKSIRNAPILKTMKQQTKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTSIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTDEWRLVVKLKNLFKIQ* 1361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14487870 14499210 - CsaV3_7G025160.1 Csa07g01427 536990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01427 1360 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 768 984 IPR000795 GO:0003924|GO:0005525
Csa07g01427 1360 Coils Coil 479 543 - -
Csa07g01427 1360 PRINTS GTP-binding elongation factor signature 772 785 IPR000795 GO:0003924|GO:0005525
Csa07g01427 1360 PRINTS GTP-binding elongation factor signature 836 846 IPR000795 GO:0003924|GO:0005525
Csa07g01427 1360 PRINTS GTP-binding elongation factor signature 852 863 IPR000795 GO:0003924|GO:0005525
Csa07g01427 1360 PRINTS GTP-binding elongation factor signature 888 897 IPR000795 GO:0003924|GO:0005525
Csa07g01427 1360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 768 1059 IPR027417 -
Csa07g01427 1360 MobiDBLite consensus disorder prediction 115 133 - -
Csa07g01427 1360 MobiDBLite consensus disorder prediction 169 186 - -
Csa07g01427 1360 Gene3D Translation factors 1223 1360 - -
Csa07g01427 1360 Coils Coil 416 445 - -
Csa07g01427 1360 Coils Coil 1205 1225 - -
Csa07g01427 1360 MobiDBLite consensus disorder prediction 364 379 - -
Csa07g01427 1360 Gene3D - 762 990 IPR027417 -
Csa07g01427 1360 MobiDBLite consensus disorder prediction 271 287 - -
Csa07g01427 1360 MobiDBLite consensus disorder prediction 1 31 - -
Csa07g01427 1360 MobiDBLite consensus disorder prediction 450 563 - -
Csa07g01427 1360 Gene3D Translation factors 991 1109 - -
Csa07g01427 1360 MobiDBLite consensus disorder prediction 726 754 - -
Csa07g01427 1360 MobiDBLite consensus disorder prediction 684 706 - -
Csa07g01427 1360 PANTHER PHOTOSYSTEM II PROTEIN D1 1 1360 - -
Csa07g01427 1360 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1093 1222 IPR036925 -
Csa07g01427 1360 Pfam Elongation factor Tu GTP binding domain 772 980 IPR000795 GO:0003924|GO:0005525
Csa07g01427 1360 MobiDBLite consensus disorder prediction 646 763 - -
Csa07g01427 1360 MobiDBLite consensus disorder prediction 187 202 - -
Csa07g01427 1360 Gene3D - 1110 1216 IPR036925 -
Csa07g01427 1360 CDD IF2_aeIF5B_IV 1231 1326 - -
Csa07g01427 1360 Pfam Elongation factor Tu domain 2 1007 1084 IPR004161 GO:0005525
Csa07g01427 1360 MobiDBLite consensus disorder prediction 654 671 - -
Csa07g01427 1360 MobiDBLite consensus disorder prediction 330 351 - -
Csa07g01427 1360 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 1360 IPR015760 -
Csa07g01427 1360 Pfam Translation-initiation factor 2 1097 1209 IPR023115 -
Csa07g01427 1360 TIGRFAM small_GTP: small GTP-binding protein domain 773 899 IPR005225 GO:0005525
Csa07g01427 1360 MobiDBLite consensus disorder prediction 408 429 - -
Csa07g01427 1360 CDD aeIF5B_II 992 1102 - -
Csa07g01427 1360 SUPERFAMILY Translation proteins 1227 1359 IPR009000 -
Csa07g01427 1360 MobiDBLite consensus disorder prediction 49 609 - -
Csa07g01427 1360 CDD IF2_eIF5B 771 981 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02772 Csa-Chr4:26573960 Csa07g01427 Csa-Chr7:14487870 6.16E-28 dispersed
Csa07g01427 Csa-Chr7:14487870 Csa04g01954 Csa-Chr4:19450187 8.10E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01427 K03243 - csv:101204360 1563.9