Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa07g01449 | ATGACGCTTTACGAAGAGAATCCAGGGGAGTCTCGCAAAGGTTTGGAAGGTGAGGATCTGTATGAAGAACTGTGGAAGGCATGTGCAGGACCTCTTGTTGAAGTTCCTGTCGATGGAGAAAGGGTTTTTTACTTCCCTCAGGGTCATATGGAACAATTGGAAGAGTCCACAAATCAGGAGCTTAATCACCAAATCCCTCATTTTGATCTCCCTCCCAAGATCCTATGTCGTGTTGTTAACATTCGTTTGCTGGCTGAAAAGGAAACGGATGAAGTCTATGCTCAAATCACTTTATACCCAGAGGCTGATCAAAGTGAGCCCCAAAGCGCTGATCCAGAGCCACCTGAGCGTACAAGGCAAACTGTTCATTCTTTTTGTAAGATTTTGACTGCTTCTGATACTAGCACTCATGGAGGTTTCTCAGTTCTTAGAAAGCATGCCACTGAATGTCTTCCTCCCCTTGATATGAGTCAATCCACCCCAACTCAGGAGTTAGCTGCCAAGGATCTTCATGGTTATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCGCGGAGGCATTTGCTAACTACGGGGTGGAGTACATTTGTTACATCAAAACGGCTGGTTGCTGGGGATGCTTTTGTTTTCTTAAGGGGTGACAATGGAGAACTGAGGGTTGGCGTTCGGCGGCAGGCTCGGCAGCAGAGCTTGATGCCTTCCTCTGTGATATCTAGCCACAGTATGCATCTTGGAGTTCTTGCCACTGCTTCTCATGCTGTTCGTACCCAGACCTATTTCGTTGTGTATTACAAACCGAGAACTAGCCAATTCATCATCAGCTTAAACAAATACTTGGAGACTGTTAAAAATGGTTATGAAGTGGGGATGCGCTTCAAGATGAGATTTGAAGGAGAAGAATCACCAGAGAGAAGGTTCACTGGAACTATTGTTGGTGTTGGTGATATGTCTCCGCAATGGTCGGATTCAAAATGGCGATCTCTAAAGATTCAATGGGATGAACCTGCTACGATTCAAAGGCCCGAGCGAGTTTCTCCATGGGAGATCGAACCCTTTGTACCTTCTGCCTCCTTAAACTTCACTCATCCTGCTATAAAGAGTAAAAGGGCCCGTCCTGTTGAGATTCCTCCTCCTGCTCCTTCAGGATTTTGGCTCCAAGGATCGACGATTTCTCACGAAATATCCCAACTAAGTGGTACGAATGAAGTTCAAAGCAGCAACAACCGGGTTGTCTGGGCTCTCGGACAGCGAAAACTTGATAGCAATAGCAGCCATTGTAATCCAGTAGCAAATGTTGAAGGCATTTGGCCTTCTCCTCCACTCAATATTTCCTTGAACCTTTACCCAGATTCAACATTTGAAAGAGAACTTGTTCAACAAAAACATCCACTATCCTCTCCTTATTCTTCATCTGTCACTTCAAAGCCTAGTAGTGACCTCATACAGCCCGATCAATTGGAGAAAGGGAGTAAACCCGACATTTCTCTTGGTTGCCGAATATTTGGAATCGATTTGAAAAATAACTGTAGCATTGTCCCTACCTTGGAAAGAAGATCGTCTTGCCTAATGATGGTGACCGATGGTGCCAAAGAACCTGTAGTTACAGCTGTTGTGACACCTCAAGTCGATGCGGGAAACCTCTCACAGCCTTCAAAGGAGCAGCAACTCTCAACCGAGCTGTTGACAAAGGGAACACAAACGAAACACATCTCAAATCTATCGTCAAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCAGTAGGTCGAGCGGTAGACTTGACAACACTTGAAGGGTATGAAGATCTGATAGACGAGCTTGAAAATGTGTTTGAAATAAAAGGAGAACTTCGTGGAATAAACAAATGGTCTATCGTTTTCACAGACGACGAAAACGACATGATGCTTGTGGGGGACGATCCATGGCCAGAGTTTTGTAAGATGGTGAAGAGGATCTTCATATGTTCAAGTGAAGAAGTAAAGAAGATGAGTAGGGAGAGCAAGATTGTTTCTCCATCATCCTTAGATAGCCTGGATTCAGAGCGAAAGACTGAATCCTAA | 2064 | 44.53 | MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQELNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLYPEADQSEPQSADPEPPERTRQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRQARQQSLMPSSVISSHSMHLGVLATASHAVRTQTYFVVYYKPRTSQFIISLNKYLETVKNGYEVGMRFKMRFEGEESPERRFTGTIVGVGDMSPQWSDSKWRSLKIQWDEPATIQRPERVSPWEIEPFVPSASLNFTHPAIKSKRARPVEIPPPAPSGFWLQGSTISHEISQLSGTNEVQSSNNRVVWALGQRKLDSNSSHCNPVANVEGIWPSPPLNISLNLYPDSTFERELVQQKHPLSSPYSSSVTSKPSSDLIQPDQLEKGSKPDISLGCRIFGIDLKNNCSIVPTLERRSSCLMMVTDGAKEPVVTAVVTPQVDAGNLSQPSKEQQLSTELLTKGTQTKHISNLSSRTRTKVQMQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRGINKWSIVFTDDENDMMLVGDDPWPEFCKMVKRIFICSSEEVKKMSRESKIVSPSSLDSLDSERKTES* | 688 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 14775256 | 14780258 | - | CsaV3_7G025380.1 | Csa07g01449 | 537012 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa07g01449 | 687 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 10 | 675 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Csa07g01449 | 687 | MobiDBLite | consensus disorder prediction | 99 | 119 | - | - | |
Csa07g01449 | 687 | Gene3D | - | 287 | 358 | - | - | |
Csa07g01449 | 687 | SUPERFAMILY | DNA-binding pseudobarrel domain | 116 | 254 | IPR015300 | - | |
Csa07g01449 | 687 | CDD | B3_DNA | 123 | 225 | IPR003340 | GO:0003677 | |
Csa07g01449 | 687 | MobiDBLite | consensus disorder prediction | 463 | 485 | - | - | |
Csa07g01449 | 687 | ProSiteProfiles | B3 DNA-binding domain profile. | 125 | 227 | IPR003340 | GO:0003677 | |
Csa07g01449 | 687 | Pfam | B3 DNA binding domain | 125 | 226 | IPR003340 | GO:0003677 | |
Csa07g01449 | 687 | PANTHER | AUXIN RESPONSE FACTOR 11 | 10 | 675 | - | - | |
Csa07g01449 | 687 | SUPERFAMILY | CAD & PB1 domains | 572 | 653 | - | - | |
Csa07g01449 | 687 | Gene3D | - | 122 | 227 | IPR015300 | - | |
Csa07g01449 | 687 | Pfam | Auxin response factor | 251 | 330 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Csa07g01449 | 687 | SMART | B3_2 | 125 | 227 | IPR003340 | GO:0003677 | |
Csa07g01449 | 687 | Pfam | AUX/IAA family | 623 | 661 | IPR033389 | - | |
Csa07g01449 | 687 | Pfam | AUX/IAA family | 568 | 613 | IPR033389 | - | |
Csa07g01449 | 687 | Gene3D | - | 573 | 665 | - | - | |
Csa07g01449 | 687 | ProSiteProfiles | PB1 domain profile. | 577 | 669 | IPR000270 | GO:0005515 | |
Csa07g01449 | 687 | MobiDBLite | consensus disorder prediction | 463 | 489 | - | - | |
Csa07g01449 | 687 | MobiDBLite | consensus disorder prediction | 663 | 687 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g00191 | Csa-Chr5:1127742 | Csa07g01449 | Csa-Chr7:14775256 | 0 | dispersed | |
Csa05g01247 | Csa-Chr5:13139550 | Csa07g01449 | Csa-Chr7:14775256 | 0 | dispersed | |
Csa05g01402 | Csa-Chr5:15021321 | Csa07g01449 | Csa-Chr7:14775256 | 2.04E-13 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32327 | PF02362 | B3 | 2.10E-21 | CL0405 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa07g01449 | K14486 | - | csv:101205805 | 1367.83 |