Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01449 ATGACGCTTTACGAAGAGAATCCAGGGGAGTCTCGCAAAGGTTTGGAAGGTGAGGATCTGTATGAAGAACTGTGGAAGGCATGTGCAGGACCTCTTGTTGAAGTTCCTGTCGATGGAGAAAGGGTTTTTTACTTCCCTCAGGGTCATATGGAACAATTGGAAGAGTCCACAAATCAGGAGCTTAATCACCAAATCCCTCATTTTGATCTCCCTCCCAAGATCCTATGTCGTGTTGTTAACATTCGTTTGCTGGCTGAAAAGGAAACGGATGAAGTCTATGCTCAAATCACTTTATACCCAGAGGCTGATCAAAGTGAGCCCCAAAGCGCTGATCCAGAGCCACCTGAGCGTACAAGGCAAACTGTTCATTCTTTTTGTAAGATTTTGACTGCTTCTGATACTAGCACTCATGGAGGTTTCTCAGTTCTTAGAAAGCATGCCACTGAATGTCTTCCTCCCCTTGATATGAGTCAATCCACCCCAACTCAGGAGTTAGCTGCCAAGGATCTTCATGGTTATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCGCGGAGGCATTTGCTAACTACGGGGTGGAGTACATTTGTTACATCAAAACGGCTGGTTGCTGGGGATGCTTTTGTTTTCTTAAGGGGTGACAATGGAGAACTGAGGGTTGGCGTTCGGCGGCAGGCTCGGCAGCAGAGCTTGATGCCTTCCTCTGTGATATCTAGCCACAGTATGCATCTTGGAGTTCTTGCCACTGCTTCTCATGCTGTTCGTACCCAGACCTATTTCGTTGTGTATTACAAACCGAGAACTAGCCAATTCATCATCAGCTTAAACAAATACTTGGAGACTGTTAAAAATGGTTATGAAGTGGGGATGCGCTTCAAGATGAGATTTGAAGGAGAAGAATCACCAGAGAGAAGGTTCACTGGAACTATTGTTGGTGTTGGTGATATGTCTCCGCAATGGTCGGATTCAAAATGGCGATCTCTAAAGATTCAATGGGATGAACCTGCTACGATTCAAAGGCCCGAGCGAGTTTCTCCATGGGAGATCGAACCCTTTGTACCTTCTGCCTCCTTAAACTTCACTCATCCTGCTATAAAGAGTAAAAGGGCCCGTCCTGTTGAGATTCCTCCTCCTGCTCCTTCAGGATTTTGGCTCCAAGGATCGACGATTTCTCACGAAATATCCCAACTAAGTGGTACGAATGAAGTTCAAAGCAGCAACAACCGGGTTGTCTGGGCTCTCGGACAGCGAAAACTTGATAGCAATAGCAGCCATTGTAATCCAGTAGCAAATGTTGAAGGCATTTGGCCTTCTCCTCCACTCAATATTTCCTTGAACCTTTACCCAGATTCAACATTTGAAAGAGAACTTGTTCAACAAAAACATCCACTATCCTCTCCTTATTCTTCATCTGTCACTTCAAAGCCTAGTAGTGACCTCATACAGCCCGATCAATTGGAGAAAGGGAGTAAACCCGACATTTCTCTTGGTTGCCGAATATTTGGAATCGATTTGAAAAATAACTGTAGCATTGTCCCTACCTTGGAAAGAAGATCGTCTTGCCTAATGATGGTGACCGATGGTGCCAAAGAACCTGTAGTTACAGCTGTTGTGACACCTCAAGTCGATGCGGGAAACCTCTCACAGCCTTCAAAGGAGCAGCAACTCTCAACCGAGCTGTTGACAAAGGGAACACAAACGAAACACATCTCAAATCTATCGTCAAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCAGTAGGTCGAGCGGTAGACTTGACAACACTTGAAGGGTATGAAGATCTGATAGACGAGCTTGAAAATGTGTTTGAAATAAAAGGAGAACTTCGTGGAATAAACAAATGGTCTATCGTTTTCACAGACGACGAAAACGACATGATGCTTGTGGGGGACGATCCATGGCCAGAGTTTTGTAAGATGGTGAAGAGGATCTTCATATGTTCAAGTGAAGAAGTAAAGAAGATGAGTAGGGAGAGCAAGATTGTTTCTCCATCATCCTTAGATAGCCTGGATTCAGAGCGAAAGACTGAATCCTAA 2064 44.53 MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQELNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLYPEADQSEPQSADPEPPERTRQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRQARQQSLMPSSVISSHSMHLGVLATASHAVRTQTYFVVYYKPRTSQFIISLNKYLETVKNGYEVGMRFKMRFEGEESPERRFTGTIVGVGDMSPQWSDSKWRSLKIQWDEPATIQRPERVSPWEIEPFVPSASLNFTHPAIKSKRARPVEIPPPAPSGFWLQGSTISHEISQLSGTNEVQSSNNRVVWALGQRKLDSNSSHCNPVANVEGIWPSPPLNISLNLYPDSTFERELVQQKHPLSSPYSSSVTSKPSSDLIQPDQLEKGSKPDISLGCRIFGIDLKNNCSIVPTLERRSSCLMMVTDGAKEPVVTAVVTPQVDAGNLSQPSKEQQLSTELLTKGTQTKHISNLSSRTRTKVQMQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELRGINKWSIVFTDDENDMMLVGDDPWPEFCKMVKRIFICSSEEVKKMSRESKIVSPSSLDSLDSERKTES* 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14775256 14780258 - CsaV3_7G025380.1 Csa07g01449 537012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01449 687 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 675 IPR044835 GO:0003677|GO:0006355|GO:0009725
Csa07g01449 687 MobiDBLite consensus disorder prediction 99 119 - -
Csa07g01449 687 Gene3D - 287 358 - -
Csa07g01449 687 SUPERFAMILY DNA-binding pseudobarrel domain 116 254 IPR015300 -
Csa07g01449 687 CDD B3_DNA 123 225 IPR003340 GO:0003677
Csa07g01449 687 MobiDBLite consensus disorder prediction 463 485 - -
Csa07g01449 687 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Csa07g01449 687 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677
Csa07g01449 687 PANTHER AUXIN RESPONSE FACTOR 11 10 675 - -
Csa07g01449 687 SUPERFAMILY CAD & PB1 domains 572 653 - -
Csa07g01449 687 Gene3D - 122 227 IPR015300 -
Csa07g01449 687 Pfam Auxin response factor 251 330 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Csa07g01449 687 SMART B3_2 125 227 IPR003340 GO:0003677
Csa07g01449 687 Pfam AUX/IAA family 623 661 IPR033389 -
Csa07g01449 687 Pfam AUX/IAA family 568 613 IPR033389 -
Csa07g01449 687 Gene3D - 573 665 - -
Csa07g01449 687 ProSiteProfiles PB1 domain profile. 577 669 IPR000270 GO:0005515
Csa07g01449 687 MobiDBLite consensus disorder prediction 463 489 - -
Csa07g01449 687 MobiDBLite consensus disorder prediction 663 687 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00191 Csa-Chr5:1127742 Csa07g01449 Csa-Chr7:14775256 0 dispersed
Csa05g01247 Csa-Chr5:13139550 Csa07g01449 Csa-Chr7:14775256 0 dispersed
Csa05g01402 Csa-Chr5:15021321 Csa07g01449 Csa-Chr7:14775256 2.04E-13 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32327 PF02362 B3 2.10E-21 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01449 K14486 - csv:101205805 1367.83